miRNA display CGI


Results 41 - 60 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 14341 0.66 0.205187
Target:  5'- cUGCCgGGCcUGCUGGUUCGCGGUGu- -3'
miRNA:   3'- aGCGG-CCGuGCGGCCGGGUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 14420 0.71 0.074451
Target:  5'- gUCGCCaGGCGCGCCugcGGCaccgugUugGGCGAAa -3'
miRNA:   3'- -AGCGG-CCGUGCGG---CCGg-----GugCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 14590 0.68 0.146387
Target:  5'- -aGCagCGGCGCgGCCGGCgCCACcGCGGg -3'
miRNA:   3'- agCG--GCCGUG-CGGCCG-GGUGcCGCUu -5'
26445 3' -65.8 NC_005357.1 + 14737 0.74 0.050358
Target:  5'- cUGCCGGCGCG-CGGCcuguauuccaagaCCACGGUGGAg -3'
miRNA:   3'- aGCGGCCGUGCgGCCG-------------GGUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 14976 0.7 0.100582
Target:  5'- gCGCUGGCauaccaGCGCCagGGCCUGCGGCc-- -3'
miRNA:   3'- aGCGGCCG------UGCGG--CCGGGUGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 16176 0.67 0.154312
Target:  5'- -gGCCGGCGggUGcCCGuGCCUuCGGCGAc -3'
miRNA:   3'- agCGGCCGU--GC-GGC-CGGGuGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 16761 0.67 0.174484
Target:  5'- cCGCCGGCugaugacguacaugACGCCGGCagaacucgCCGaGGUGGAc -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCCG--------GGUgCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 16802 0.66 0.180465
Target:  5'- gUUGCCaGUugGUCGcGCCCA-GGCGGc -3'
miRNA:   3'- -AGCGGcCGugCGGC-CGGGUgCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 17079 0.67 0.158419
Target:  5'- -gGCCGGcuaugcgaaCugGCCGGCCUGgacaauccCGGCGAc -3'
miRNA:   3'- agCGGCC---------GugCGGCCGGGU--------GCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 17346 0.67 0.175848
Target:  5'- gCGCCgGGCGCGCUGcGCUgggUGGCGAu -3'
miRNA:   3'- aGCGG-CCGUGCGGC-CGGgu-GCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 17729 0.69 0.111776
Target:  5'- cCGaCUGGCACcgauggacaGCCugggcguggacguGGCCCGCGGCGGg -3'
miRNA:   3'- aGC-GGCCGUG---------CGG-------------CCGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 17798 0.67 0.175848
Target:  5'- cCGCCGGCACGCCauguGGUUCgACGuGCc-- -3'
miRNA:   3'- aGCGGCCGUGCGG----CCGGG-UGC-CGcuu -5'
26445 3' -65.8 NC_005357.1 + 17975 0.67 0.149906
Target:  5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3'
miRNA:   3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5'
26445 3' -65.8 NC_005357.1 + 18279 0.68 0.138834
Target:  5'- cUUGCCGGCcgucaGCgGGCCgGUGGCGAc -3'
miRNA:   3'- -AGCGGCCGug---CGgCCGGgUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 18397 0.68 0.135194
Target:  5'- gCGCCGGU--GgCGGCCaCGuCGGCGAAg -3'
miRNA:   3'- aGCGGCCGugCgGCCGG-GU-GCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 18469 0.67 0.154312
Target:  5'- gCGCCGGCgGCGUCGGCcgauucguCCACcGUGAu -3'
miRNA:   3'- aGCGGCCG-UGCGGCCG--------GGUGcCGCUu -5'
26445 3' -65.8 NC_005357.1 + 18562 0.7 0.090206
Target:  5'- aCGUCGGUggAgGCCGcGCUCGCGGUGAc -3'
miRNA:   3'- aGCGGCCG--UgCGGC-CGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 19597 0.71 0.083099
Target:  5'- cUGUCGGC-UGUCGGCagCGCGGCGAAg -3'
miRNA:   3'- aGCGGCCGuGCGGCCGg-GUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 19631 0.66 0.200019
Target:  5'- -aGuCCGGCACcaugcugaCCGGCCCGCagGGCGu- -3'
miRNA:   3'- agC-GGCCGUGc-------GGCCGGGUG--CCGCuu -5'
26445 3' -65.8 NC_005357.1 + 20226 0.68 0.124793
Target:  5'- -gGCCGGC-UGuuGGCCUugGGUGc- -3'
miRNA:   3'- agCGGCCGuGCggCCGGGugCCGCuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.