miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 4273 0.72 0.062904
Target:  5'- gCGCCGGCAUggugaugGCCGuGUCgGCGGUGAAc -3'
miRNA:   3'- aGCGGCCGUG-------CGGC-CGGgUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 13544 0.73 0.059675
Target:  5'- cUGUCGGC-CGCCugacucgguGCCCACGGCGAu -3'
miRNA:   3'- aGCGGCCGuGCGGc--------CGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 10196 0.76 0.03411
Target:  5'- aCGUCaagcGCACGCCGGCCCGaugguCGGCGGAu -3'
miRNA:   3'- aGCGGc---CGUGCGGCCGGGU-----GCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 1294 0.69 0.109093
Target:  5'- cCGCCcaCAcCGCCGcGCCCAgGGCGAc -3'
miRNA:   3'- aGCGGccGU-GCGGC-CGGGUgCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 28553 0.69 0.118276
Target:  5'- cUUG-CGGC-CGCCGGCCauCGCGGCGc- -3'
miRNA:   3'- -AGCgGCCGuGCGGCCGG--GUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 5203 0.68 0.138834
Target:  5'- aUUGCCGGCua-CCGuGCCCACGuCGAGg -3'
miRNA:   3'- -AGCGGCCGugcGGC-CGGGUGCcGCUU- -5'
26445 3' -65.8 NC_005357.1 + 18279 0.68 0.138834
Target:  5'- cUUGCCGGCcgucaGCgGGCCgGUGGCGAc -3'
miRNA:   3'- -AGCGGCCGug---CGgCCGGgUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 18397 0.68 0.135194
Target:  5'- gCGCCGGU--GgCGGCCaCGuCGGCGAAg -3'
miRNA:   3'- aGCGGCCGugCgGCCGG-GU-GCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 23421 0.68 0.134834
Target:  5'- gCGCCGGUcagugcgACGCCGGCCgGgauGCGGAu -3'
miRNA:   3'- aGCGGCCG-------UGCGGCCGGgUgc-CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 22265 0.68 0.134834
Target:  5'- uUCGCCGGC-CGUCaGCgaauggugauagaCCACGGCGu- -3'
miRNA:   3'- -AGCGGCCGuGCGGcCG-------------GGUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 185 0.68 0.131641
Target:  5'- gUCGCUgGGCACcgucacgcuGCCGGgCgaCACGGCGAAc -3'
miRNA:   3'- -AGCGG-CCGUG---------CGGCCgG--GUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 7652 0.68 0.127151
Target:  5'- aCGCCGGCuccuugccguacacGCGCCGuuCUuugGCGGCGAu -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCcgGG---UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 10927 0.68 0.124793
Target:  5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3'
miRNA:   3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 40407 0.68 0.124793
Target:  5'- -gGCCGGUAUGCCGGUgC-UGGUGGc -3'
miRNA:   3'- agCGGCCGUGCGGCCGgGuGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 20226 0.68 0.124793
Target:  5'- -gGCCGGC-UGuuGGCCUugGGUGc- -3'
miRNA:   3'- agCGGCCGuGCggCCGGGugCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 23568 0.69 0.121494
Target:  5'- aUCGCCGGCAggUGCgGGCggGgGGCGAc -3'
miRNA:   3'- -AGCGGCCGU--GCGgCCGggUgCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 21382 0.69 0.121494
Target:  5'- gUCGCaauGGCGCGCUgGGCCUGC-GCGAGc -3'
miRNA:   3'- -AGCGg--CCGUGCGG-CCGGGUGcCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 7528 0.69 0.121494
Target:  5'- gCGuCCGaguguucuuccGCACGCUGGCUCGCGGcCGGGu -3'
miRNA:   3'- aGC-GGC-----------CGUGCGGCCGGGUGCC-GCUU- -5'
26445 3' -65.8 NC_005357.1 + 13856 0.66 0.205187
Target:  5'- cUGCCGGUggccgacgugcGCGCCgcgauGGCCgGCGGCc-- -3'
miRNA:   3'- aGCGGCCG-----------UGCGG-----CCGGgUGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 10107 0.79 0.016821
Target:  5'- gUUGUCGGgACGCCGGCCUugaugGCGGCGAu -3'
miRNA:   3'- -AGCGGCCgUGCGGCCGGG-----UGCCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.