miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 10927 0.68 0.124793
Target:  5'- cCGCCGGUuuGCagGGCCUcgggcaguugcGCGGCGAc -3'
miRNA:   3'- aGCGGCCGugCGg-CCGGG-----------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 20226 0.68 0.124793
Target:  5'- -gGCCGGC-UGuuGGCCUugGGUGc- -3'
miRNA:   3'- agCGGCCGuGCggCCGGGugCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 7652 0.68 0.127151
Target:  5'- aCGCCGGCuccuugccguacacGCGCCGuuCUuugGCGGCGAu -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCcgGG---UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 7251 0.68 0.130592
Target:  5'- gCGCgGGCcgauguCGCCGGCCUugugcagcuucucgGCGGUGGu -3'
miRNA:   3'- aGCGgCCGu-----GCGGCCGGG--------------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 4393 0.68 0.131641
Target:  5'- gCGCCGuCGCGCCgGGCCUugaGCGuGCGGc -3'
miRNA:   3'- aGCGGCcGUGCGG-CCGGG---UGC-CGCUu -5'
26445 3' -65.8 NC_005357.1 + 185 0.68 0.131641
Target:  5'- gUCGCUgGGCACcgucacgcuGCCGGgCgaCACGGCGAAc -3'
miRNA:   3'- -AGCGG-CCGUG---------CGGCCgG--GUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 23421 0.68 0.134834
Target:  5'- gCGCCGGUcagugcgACGCCGGCCgGgauGCGGAu -3'
miRNA:   3'- aGCGGCCG-------UGCGGCCGGgUgc-CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 22265 0.68 0.134834
Target:  5'- uUCGCCGGC-CGUCaGCgaauggugauagaCCACGGCGu- -3'
miRNA:   3'- -AGCGGCCGuGCGGcCG-------------GGUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 18397 0.68 0.135194
Target:  5'- gCGCCGGU--GgCGGCCaCGuCGGCGAAg -3'
miRNA:   3'- aGCGGCCGugCgGCCGG-GU-GCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 31489 0.68 0.135194
Target:  5'- gUCGCCGcGCAacUGCCcgaGGCCCugcaaacCGGCGGg -3'
miRNA:   3'- -AGCGGC-CGU--GCGG---CCGGGu------GCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 35263 0.68 0.135194
Target:  5'- gCGUCaGCGCGUCGGgCCugGGCu-- -3'
miRNA:   3'- aGCGGcCGUGCGGCCgGGugCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 11389 0.68 0.138834
Target:  5'- uUCGC--GCACGuuGGCCCGC-GCGAu -3'
miRNA:   3'- -AGCGgcCGUGCggCCGGGUGcCGCUu -5'
26445 3' -65.8 NC_005357.1 + 5203 0.68 0.138834
Target:  5'- aUUGCCGGCua-CCGuGCCCACGuCGAGg -3'
miRNA:   3'- -AGCGGCCGugcGGC-CGGGUGCcGCUU- -5'
26445 3' -65.8 NC_005357.1 + 18279 0.68 0.138834
Target:  5'- cUUGCCGGCcgucaGCgGGCCgGUGGCGAc -3'
miRNA:   3'- -AGCGGCCGug---CGgCCGGgUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 7734 0.68 0.142565
Target:  5'- aCGCuCGGCG-GCCGGCUUGCuguuGGCGAc -3'
miRNA:   3'- aGCG-GCCGUgCGGCCGGGUG----CCGCUu -5'
26445 3' -65.8 NC_005357.1 + 33586 0.68 0.142565
Target:  5'- -gGCCaaCGCGCUGGCCCGCGuuGCGGc -3'
miRNA:   3'- agCGGccGUGCGGCCGGGUGC--CGCUu -5'
26445 3' -65.8 NC_005357.1 + 38545 0.68 0.142565
Target:  5'- uUCGgCGGCGacggcaGCgCGGCCUACaGCGAc -3'
miRNA:   3'- -AGCgGCCGUg-----CG-GCCGGGUGcCGCUu -5'
26445 3' -65.8 NC_005357.1 + 21274 0.68 0.142565
Target:  5'- aUGUCGGCGuaagUGUCGGCCCAgCGGuCGGc -3'
miRNA:   3'- aGCGGCCGU----GCGGCCGGGU-GCC-GCUu -5'
26445 3' -65.8 NC_005357.1 + 41340 0.68 0.144847
Target:  5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3'
miRNA:   3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 23759 0.68 0.146387
Target:  5'- aUGCCGGCGCcaccggGCCGauGCgCCGCGGCu-- -3'
miRNA:   3'- aGCGGCCGUG------CGGC--CG-GGUGCCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.