miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 31007 0.67 0.162624
Target:  5'- gCGaCCuGCACGCCGGCUCGCcGCu-- -3'
miRNA:   3'- aGC-GGcCGUGCGGCCGGGUGcCGcuu -5'
26445 3' -65.8 NC_005357.1 + 27701 0.67 0.162624
Target:  5'- -gGCC-GCGCGCCGGCa-GCGGCu-- -3'
miRNA:   3'- agCGGcCGUGCGGCCGggUGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 4678 0.67 0.162624
Target:  5'- gCaCCaGCGCGCCGGauagCGCGGCGAGa -3'
miRNA:   3'- aGcGGcCGUGCGGCCgg--GUGCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 7375 0.67 0.158419
Target:  5'- uUCGuCCaGCG-GCgGGCaCCGCGGCGAc -3'
miRNA:   3'- -AGC-GGcCGUgCGgCCG-GGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 17079 0.67 0.158419
Target:  5'- -gGCCGGcuaugcgaaCugGCCGGCCUGgacaauccCGGCGAc -3'
miRNA:   3'- agCGGCC---------GugCGGCCGGGU--------GCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 12285 0.67 0.158419
Target:  5'- gUUGCUGGCccagcgUGCCGG-CUACGGCGGc -3'
miRNA:   3'- -AGCGGCCGu-----GCGGCCgGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 16176 0.67 0.154312
Target:  5'- -gGCCGGCGggUGcCCGuGCCUuCGGCGAc -3'
miRNA:   3'- agCGGCCGU--GC-GGC-CGGGuGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 42256 0.67 0.154312
Target:  5'- aCGCCGGCauucuGCGCgCGGCagCUugGGCa-- -3'
miRNA:   3'- aGCGGCCG-----UGCG-GCCG--GGugCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 6389 0.67 0.154312
Target:  5'- -gGUCGGC-CGCCGcggcGCCCuCGGUGAu -3'
miRNA:   3'- agCGGCCGuGCGGC----CGGGuGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 18469 0.67 0.154312
Target:  5'- gCGCCGGCgGCGUCGGCcgauucguCCACcGUGAu -3'
miRNA:   3'- aGCGGCCG-UGCGGCCG--------GGUGcCGCUu -5'
26445 3' -65.8 NC_005357.1 + 37618 0.67 0.153907
Target:  5'- gUCGCCGGCcagcaaucccgcaGCGCCaGCCgGCGuGCu-- -3'
miRNA:   3'- -AGCGGCCG-------------UGCGGcCGGgUGC-CGcuu -5'
26445 3' -65.8 NC_005357.1 + 34316 0.67 0.150302
Target:  5'- aCGCCGGC-CGCgCGGUgCAgGGCc-- -3'
miRNA:   3'- aGCGGCCGuGCG-GCCGgGUgCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 27422 0.67 0.150302
Target:  5'- gCGCCuGGCGCaCCGcGCCCgGCGGCc-- -3'
miRNA:   3'- aGCGG-CCGUGcGGC-CGGG-UGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 17975 0.67 0.149906
Target:  5'- gUCGUCGGCGucaauguCGCCGaGgCCGCGcGCGGc -3'
miRNA:   3'- -AGCGGCCGU-------GCGGC-CgGGUGC-CGCUu -5'
26445 3' -65.8 NC_005357.1 + 14590 0.68 0.146387
Target:  5'- -aGCagCGGCGCgGCCGGCgCCACcGCGGg -3'
miRNA:   3'- agCG--GCCGUG-CGGCCG-GGUGcCGCUu -5'
26445 3' -65.8 NC_005357.1 + 23759 0.68 0.146387
Target:  5'- aUGCCGGCGCcaccggGCCGauGCgCCGCGGCu-- -3'
miRNA:   3'- aGCGGCCGUG------CGGC--CG-GGUGCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 41340 0.68 0.144847
Target:  5'- cCGCCGccaacaugaaguacGCGCGCCGGgucgcacaggaaaUCCGCGaGCGAAu -3'
miRNA:   3'- aGCGGC--------------CGUGCGGCC-------------GGGUGC-CGCUU- -5'
26445 3' -65.8 NC_005357.1 + 21274 0.68 0.142565
Target:  5'- aUGUCGGCGuaagUGUCGGCCCAgCGGuCGGc -3'
miRNA:   3'- aGCGGCCGU----GCGGCCGGGU-GCC-GCUu -5'
26445 3' -65.8 NC_005357.1 + 38545 0.68 0.142565
Target:  5'- uUCGgCGGCGacggcaGCgCGGCCUACaGCGAc -3'
miRNA:   3'- -AGCgGCCGUg-----CG-GCCGGGUGcCGCUu -5'
26445 3' -65.8 NC_005357.1 + 7734 0.68 0.142565
Target:  5'- aCGCuCGGCG-GCCGGCUUGCuguuGGCGAc -3'
miRNA:   3'- aGCG-GCCGUgCGGCCGGGUG----CCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.