miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 3' -65.8 NC_005357.1 + 21539 0.66 0.184711
Target:  5'- gUUGCCGGCA-GUCGGUuccguggucgaaaUCACGGCGc- -3'
miRNA:   3'- -AGCGGCCGUgCGGCCG-------------GGUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 604 0.66 0.18376
Target:  5'- cCGCCuGCGgGUCGGCCagcagcgccguggaCACGGCGu- -3'
miRNA:   3'- aGCGGcCGUgCGGCCGG--------------GUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 1706 0.66 0.180465
Target:  5'- uUCGCC-GUggGCCGGCgUGCcGGCGAGg -3'
miRNA:   3'- -AGCGGcCGugCGGCCGgGUG-CCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 16802 0.66 0.180465
Target:  5'- gUUGCCaGUugGUCGcGCCCA-GGCGGc -3'
miRNA:   3'- -AGCGGcCGugCGGC-CGGGUgCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 25978 0.66 0.180465
Target:  5'- uUCcUCGGUuuccuCGCCGGUCUGCGGCGu- -3'
miRNA:   3'- -AGcGGCCGu----GCGGCCGGGUGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 5581 0.66 0.180465
Target:  5'- -gGCCGGCAUaCUccacgaauuuGGCCCAcuCGGCGGGg -3'
miRNA:   3'- agCGGCCGUGcGG----------CCGGGU--GCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 24351 0.67 0.177682
Target:  5'- gCGCCGGCuuCGgCGGCCCAgcacgcaccccgcgcCGGUa-- -3'
miRNA:   3'- aGCGGCCGu-GCgGCCGGGU---------------GCCGcuu -5'
26445 3' -65.8 NC_005357.1 + 24012 0.67 0.175848
Target:  5'- -gGUgGGCGCGUCGGCCaauuCaGCGAAg -3'
miRNA:   3'- agCGgCCGUGCGGCCGGgu--GcCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 2029 0.67 0.175848
Target:  5'- gCaCCGGCAUaCCGGCCgccuCGGCGAc -3'
miRNA:   3'- aGcGGCCGUGcGGCCGGgu--GCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 17798 0.67 0.175848
Target:  5'- cCGCCGGCACGCCauguGGUUCgACGuGCc-- -3'
miRNA:   3'- aGCGGCCGUGCGG----CCGGG-UGC-CGcuu -5'
26445 3' -65.8 NC_005357.1 + 17346 0.67 0.175848
Target:  5'- gCGCCgGGCGCGCUGcGCUgggUGGCGAu -3'
miRNA:   3'- aGCGG-CCGUGCGGC-CGGgu-GCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 16761 0.67 0.174484
Target:  5'- cCGCCGGCugaugacguacaugACGCCGGCagaacucgCCGaGGUGGAc -3'
miRNA:   3'- aGCGGCCG--------------UGCGGCCG--------GGUgCCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 23091 0.67 0.171337
Target:  5'- cUCGCCccgACGCCaacggcggcGCCCACGGCGAc -3'
miRNA:   3'- -AGCGGccgUGCGGc--------CGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 40546 0.67 0.171337
Target:  5'- uUCGCCcacccGGCcaGCGCCGGCC-ACGGgcUGAAc -3'
miRNA:   3'- -AGCGG-----CCG--UGCGGCCGGgUGCC--GCUU- -5'
26445 3' -65.8 NC_005357.1 + 29416 0.67 0.171337
Target:  5'- gUCGCCacuGCGCuGCgCGGCCUguacgagaACGGCGGg -3'
miRNA:   3'- -AGCGGc--CGUG-CG-GCCGGG--------UGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 4569 0.67 0.171337
Target:  5'- gUCGCCgaGGCGCuGCuCGGUgCGCcaGGCGAGg -3'
miRNA:   3'- -AGCGG--CCGUG-CG-GCCGgGUG--CCGCUU- -5'
26445 3' -65.8 NC_005357.1 + 27808 0.67 0.170004
Target:  5'- -aGCCGcagcacguccucgcGCGCGCU-GCCCGCGGUGGc -3'
miRNA:   3'- agCGGC--------------CGUGCGGcCGGGUGCCGCUu -5'
26445 3' -65.8 NC_005357.1 + 30145 0.67 0.16693
Target:  5'- -aGCCGGCACGCUGGgCCA--GCa-- -3'
miRNA:   3'- agCGGCCGUGCGGCCgGGUgcCGcuu -5'
26445 3' -65.8 NC_005357.1 + 22078 0.67 0.16693
Target:  5'- -gGUCGGCGCG-CGGCUCgAUGGCGu- -3'
miRNA:   3'- agCGGCCGUGCgGCCGGG-UGCCGCuu -5'
26445 3' -65.8 NC_005357.1 + 31007 0.67 0.162624
Target:  5'- gCGaCCuGCACGCCGGCUCGCcGCu-- -3'
miRNA:   3'- aGC-GGcCGUGCGGCCGGGUGcCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.