Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26445 | 5' | -58.6 | NC_005357.1 | + | 326 | 0.72 | 0.149618 |
Target: 5'- uACCgucagGCugGCGGUGGCGUCGCGCaGCAGg -3' miRNA: 3'- -UGGa----CG--CGCCGUCGUAGUGCG-CGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 8654 | 0.73 | 0.14141 |
Target: 5'- gGCCUucaucGCGCGGuCGGCAUUGCGUGCc-- -3' miRNA: 3'- -UGGA-----CGCGCC-GUCGUAGUGCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 4118 | 0.75 | 0.089275 |
Target: 5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3' miRNA: 3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26273 | 0.76 | 0.086709 |
Target: 5'- gGCCUG-GuCGGCucgcGCAUCGCGCGCGAu -3' miRNA: 3'- -UGGACgC-GCCGu---CGUAGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 454 | 0.68 | 0.286371 |
Target: 5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3' miRNA: 3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 27800 | 0.68 | 0.286371 |
Target: 5'- cGCC-GCGCagccGCAGCAcguccUCGCGCGCGc- -3' miRNA: 3'- -UGGaCGCGc---CGUCGU-----AGUGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 28620 | 0.66 | 0.394622 |
Target: 5'- aACCggGCGCGGaugaggccggcCAGUucCGCGCGCAGu -3' miRNA: 3'- -UGGa-CGCGCC-----------GUCGuaGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 11492 | 0.66 | 0.394622 |
Target: 5'- cGCCUGCGacaccgcaaagGGCAGCGccugcgCugGCGUGAGg -3' miRNA: 3'- -UGGACGCg----------CCGUCGUa-----GugCGCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 34067 | 0.66 | 0.388159 |
Target: 5'- uCgaGCGCGGCggcgcaggagguacuGGCAUgagcacgCACGCGCAAc -3' miRNA: 3'- uGgaCGCGCCG---------------UCGUA-------GUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 35396 | 0.66 | 0.385411 |
Target: 5'- cGCCUGCuGCaacaGGCGGCAcaaacgcccaUCACGCGa--- -3' miRNA: 3'- -UGGACG-CG----CCGUCGU----------AGUGCGCguuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 22617 | 0.66 | 0.375443 |
Target: 5'- cGCCccgcGCGCGGCAGCAgguagUCGCugauuuccuuccaGUGCGAc -3' miRNA: 3'- -UGGa---CGCGCCGUCGU-----AGUG-------------CGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 1102 | 0.67 | 0.367419 |
Target: 5'- gGCCgUGuCGC-GCGGCAUguCGCGCAu- -3' miRNA: 3'- -UGG-AC-GCGcCGUCGUAguGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 35990 | 0.67 | 0.350014 |
Target: 5'- cGCCUucgcGgGCGGUGGUGUCGCGaGCGAGg -3' miRNA: 3'- -UGGA----CgCGCCGUCGUAGUGCgCGUUU- -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 2214 | 0.67 | 0.341533 |
Target: 5'- cCCU-CGUcgGGUAGCAcCACGCGCAGc -3' miRNA: 3'- uGGAcGCG--CCGUCGUaGUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 25768 | 0.67 | 0.325022 |
Target: 5'- -gCUGgGCGGCGGCAaCgauggccgcgauGCGCGCGGc -3' miRNA: 3'- ugGACgCGCCGUCGUaG------------UGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 10864 | 0.67 | 0.324212 |
Target: 5'- cCCUGCGUGGCuucggucGGCGcgaUGCGCGCGGc -3' miRNA: 3'- uGGACGCGCCG-------UCGUa--GUGCGCGUUu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 26046 | 0.68 | 0.309111 |
Target: 5'- aGCCcGCGCGGCGgGCGcgcucCAUGCGCu-- -3' miRNA: 3'- -UGGaCGCGCCGU-CGUa----GUGCGCGuuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 2369 | 0.68 | 0.301381 |
Target: 5'- gGCCUGCacGUGGCAGaCGccCGCGUGCGu- -3' miRNA: 3'- -UGGACG--CGCCGUC-GUa-GUGCGCGUuu -5' |
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26445 | 5' | -58.6 | NC_005357.1 | + | 35955 | 0.79 | 0.050988 |
Target: 5'- gGCCUGCGCGGCGuGCAguUCcUGCGCGAc -3' miRNA: 3'- -UGGACGCGCCGU-CGU--AGuGCGCGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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