miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26445 5' -58.6 NC_005357.1 + 10094 0.66 0.394622
Target:  5'- gACCUGgGCGGCGGuUGUCGgGaCGCc-- -3'
miRNA:   3'- -UGGACgCGCCGUC-GUAGUgC-GCGuuu -5'
26445 5' -58.6 NC_005357.1 + 30283 0.67 0.362135
Target:  5'- cGCCUacgcggaagcgcagcGCGUGGC-GCGUCGCGC-CAAc -3'
miRNA:   3'- -UGGA---------------CGCGCCGuCGUAGUGCGcGUUu -5'
26445 5' -58.6 NC_005357.1 + 5533 0.68 0.286371
Target:  5'- uCCagGC-CGGCAGCuucuggucaAUCACGCGCAu- -3'
miRNA:   3'- uGGa-CGcGCCGUCG---------UAGUGCGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 40611 0.69 0.271956
Target:  5'- cGCCU-CGUGGUcGgGUCAUGCGCAAu -3'
miRNA:   3'- -UGGAcGCGCCGuCgUAGUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 8559 0.7 0.226079
Target:  5'- cGCCgaugGCG-GGCAGCGaCAgGCGCGAc -3'
miRNA:   3'- -UGGa---CGCgCCGUCGUaGUgCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 1036 0.7 0.208512
Target:  5'- gGCCacgGCcgGCGGCAGCAUguCGcCGCGAAc -3'
miRNA:   3'- -UGGa--CG--CGCCGUCGUAguGC-GCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 4118 0.75 0.089275
Target:  5'- aGCCUGCGCuGCAGCGUUGCuucccgGCGCAu- -3'
miRNA:   3'- -UGGACGCGcCGUCGUAGUG------CGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 17754 0.66 0.403975
Target:  5'- aACCccagGUGUGcaguucgaGCAGCgaGUCGCGCGCGAAc -3'
miRNA:   3'- -UGGa---CGCGC--------CGUCG--UAGUGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 28620 0.66 0.394622
Target:  5'- aACCggGCGCGGaugaggccggcCAGUucCGCGCGCAGu -3'
miRNA:   3'- -UGGa-CGCGCC-----------GUCGuaGUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 11492 0.66 0.394622
Target:  5'- cGCCUGCGacaccgcaaagGGCAGCGccugcgCugGCGUGAGg -3'
miRNA:   3'- -UGGACGCg----------CCGUCGUa-----GugCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 454 0.68 0.286371
Target:  5'- -gCUGCGCGGcCAGCuugCGgGCGCu-- -3'
miRNA:   3'- ugGACGCGCC-GUCGua-GUgCGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 8120 0.68 0.27909
Target:  5'- cACC-GCGCGGcCGGCGUUgguuguggGCGUGCGGGu -3'
miRNA:   3'- -UGGaCGCGCC-GUCGUAG--------UGCGCGUUU- -5'
26445 5' -58.6 NC_005357.1 + 17368 0.68 0.27909
Target:  5'- cGCCUGCGacaGGUAugccuGCAUCGCGC-CGAc -3'
miRNA:   3'- -UGGACGCg--CCGU-----CGUAGUGCGcGUUu -5'
26445 5' -58.6 NC_005357.1 + 33738 0.69 0.271251
Target:  5'- aAUCUGCGCGGC-GCA-CACcugggcgGCGCAGc -3'
miRNA:   3'- -UGGACGCGCCGuCGUaGUG-------CGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 37294 0.72 0.162744
Target:  5'- cGCCUGCGCGGCAcguuGCAguUCAacgGCGCc-- -3'
miRNA:   3'- -UGGACGCGCCGU----CGU--AGUg--CGCGuuu -5'
26445 5' -58.6 NC_005357.1 + 3108 0.67 0.358643
Target:  5'- gACCUGaUGCGGCGuCAUaGCGUGCGGu -3'
miRNA:   3'- -UGGAC-GCGCCGUcGUAgUGCGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 1102 0.67 0.367419
Target:  5'- gGCCgUGuCGC-GCGGCAUguCGCGCAu- -3'
miRNA:   3'- -UGG-AC-GCGcCGUCGUAguGCGCGUuu -5'
26445 5' -58.6 NC_005357.1 + 22617 0.66 0.375443
Target:  5'- cGCCccgcGCGCGGCAGCAgguagUCGCugauuuccuuccaGUGCGAc -3'
miRNA:   3'- -UGGa---CGCGCCGUCGU-----AGUG-------------CGCGUUu -5'
26445 5' -58.6 NC_005357.1 + 35396 0.66 0.385411
Target:  5'- cGCCUGCuGCaacaGGCGGCAcaaacgcccaUCACGCGa--- -3'
miRNA:   3'- -UGGACG-CG----CCGUCGU----------AGUGCGCguuu -5'
26445 5' -58.6 NC_005357.1 + 34067 0.66 0.388159
Target:  5'- uCgaGCGCGGCggcgcaggagguacuGGCAUgagcacgCACGCGCAAc -3'
miRNA:   3'- uGgaCGCGCCG---------------UCGUA-------GUGCGCGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.