Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26446 | 3' | -57.7 | NC_005357.1 | + | 16117 | 0.69 | 0.365741 |
Target: 5'- gGCUGCaCGUcGGUGgc-CCCGACGuAGGa -3' miRNA: 3'- -CGACGcGCA-CCACgauGGGCUGC-UCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 14083 | 0.7 | 0.340654 |
Target: 5'- --cGCGC-----GCUGCCCGACGAGGc -3' miRNA: 3'- cgaCGCGcaccaCGAUGGGCUGCUCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 34446 | 0.71 | 0.287065 |
Target: 5'- --cGC-CGUGGUGCUgcuGCCUGACGAa- -3' miRNA: 3'- cgaCGcGCACCACGA---UGGGCUGCUcc -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 12523 | 0.71 | 0.273024 |
Target: 5'- --aGCGCGUcgaGGUGCUGCUCGACcucGGc -3' miRNA: 3'- cgaCGCGCA---CCACGAUGGGCUGcu-CC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 23929 | 0.72 | 0.222338 |
Target: 5'- gGCauagGCGUGaUGGUcagGCgccGCCCGGCGAGGu -3' miRNA: 3'- -CGa---CGCGC-ACCA---CGa--UGGGCUGCUCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 27693 | 0.78 | 0.089846 |
Target: 5'- uGCUGCGCGUacugccuGGgGCUACCgGGCGcAGGg -3' miRNA: 3'- -CGACGCGCA-------CCaCGAUGGgCUGC-UCC- -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 17356 | 0.79 | 0.080431 |
Target: 5'- cGCUGCGCuggGUGGcgaUGCUGCCCGAUGGu- -3' miRNA: 3'- -CGACGCG---CACC---ACGAUGGGCUGCUcc -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 39603 | 0.81 | 0.053836 |
Target: 5'- cGCUGCGCGUGGccGCgagcaccugGCCCGACGAa- -3' miRNA: 3'- -CGACGCGCACCa-CGa--------UGGGCUGCUcc -5' |
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26446 | 3' | -57.7 | NC_005357.1 | + | 40211 | 1.12 | 0.000265 |
Target: 5'- uGCUGCGCGUGGUGCUACCCGACGAGGg -3' miRNA: 3'- -CGACGCGCACCACGAUGGGCUGCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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