Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26447 | 3' | -58 | NC_005357.1 | + | 4323 | 0.74 | 0.149637 |
Target: 5'- uUGACCUCcacgaugguGCCAGCCuugaUGCUGGCCg-- -3' miRNA: 3'- uGCUGGAG---------CGGUUGG----ACGACCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 23003 | 0.67 | 0.419314 |
Target: 5'- --cGCCUgGUCGGCCUGCUGcugcGCCUg- -3' miRNA: 3'- ugcUGGAgCGGUUGGACGAC----CGGAac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 24748 | 0.67 | 0.416456 |
Target: 5'- cGCGGCCUCGaCCcaugcugucggaauGACCUGCcacgGGUCg-- -3' miRNA: 3'- -UGCUGGAGC-GG--------------UUGGACGa---CCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 11366 | 0.67 | 0.404208 |
Target: 5'- gGCGACCugcUCGCCcggcaccucgguggcGACCUGaugGGCCa-- -3' miRNA: 3'- -UGCUGG---AGCGG---------------UUGGACga-CCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 28877 | 0.67 | 0.391277 |
Target: 5'- cACGuCCUCGCUgcuGGCguagUUGCUGGCCg-- -3' miRNA: 3'- -UGCuGGAGCGG---UUG----GACGACCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 19995 | 0.68 | 0.355849 |
Target: 5'- cGCGuagaaCUCGCCAACUUGCUcGGCa--- -3' miRNA: 3'- -UGCug---GAGCGGUUGGACGA-CCGgaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 731 | 0.69 | 0.307067 |
Target: 5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 34192 | 0.7 | 0.284662 |
Target: 5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 20313 | 0.7 | 0.284662 |
Target: 5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3' miRNA: 3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 20217 | 0.7 | 0.284662 |
Target: 5'- aGCGcCCgcgGCCGG-CUGUUGGCCUUGg -3' miRNA: 3'- -UGCuGGag-CGGUUgGACGACCGGAAC- -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 21177 | 0.7 | 0.277486 |
Target: 5'- cGCGGCCUgcUGCgCGGCCugcUGCUGGUCUg- -3' miRNA: 3'- -UGCUGGA--GCG-GUUGG---ACGACCGGAac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 28673 | 0.7 | 0.250223 |
Target: 5'- gGCGGCCUCGCCAGCgCgGC-GcGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUG-GaCGaC-CGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 37609 | 0.71 | 0.241216 |
Target: 5'- gACGACggCGCCGGCCccgaccucuacaaGCUGGCCUa- -3' miRNA: 3'- -UGCUGgaGCGGUUGGa------------CGACCGGAac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 34993 | 0.71 | 0.23744 |
Target: 5'- -aGGCCgaaGCCGAaCUGCUGGCCg-- -3' miRNA: 3'- ugCUGGag-CGGUUgGACGACCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 10917 | 0.71 | 0.225208 |
Target: 5'- gGCGACCUgccCGCCggUUUGCagGGCCUc- -3' miRNA: 3'- -UGCUGGA---GCGGuuGGACGa-CCGGAac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 4382 | 0.71 | 0.219295 |
Target: 5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3' miRNA: 3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 37431 | 0.72 | 0.207866 |
Target: 5'- -gGACUgCGCCGACCUGCUGuucGCCa-- -3' miRNA: 3'- ugCUGGaGCGGUUGGACGAC---CGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 24448 | 0.72 | 0.20454 |
Target: 5'- cGCGGCCUCGgCGacauugacgccgacgACCUGCugcuUGGCCUg- -3' miRNA: 3'- -UGCUGGAGCgGU---------------UGGACG----ACCGGAac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 18261 | 0.73 | 0.15819 |
Target: 5'- cACGACCUgCGCCGagaACUUGCcGGCCg-- -3' miRNA: 3'- -UGCUGGA-GCGGU---UGGACGaCCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 34924 | 0.74 | 0.133783 |
Target: 5'- aACGccACCUCGgCAACCUGCUGGgCg-- -3' miRNA: 3'- -UGC--UGGAGCgGUUGGACGACCgGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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