miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26447 3' -58 NC_005357.1 + 13034 0.66 0.437688
Target:  5'- gACGGCCUCGUCAucGCgUUGCUugagugcGGCCg-- -3'
miRNA:   3'- -UGCUGGAGCGGU--UG-GACGA-------CCGGaac -5'
26447 3' -58 NC_005357.1 + 20313 0.7 0.284662
Target:  5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3'
miRNA:   3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5'
26447 3' -58 NC_005357.1 + 34192 0.7 0.284662
Target:  5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3'
miRNA:   3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5'
26447 3' -58 NC_005357.1 + 731 0.69 0.307067
Target:  5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3'
miRNA:   3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5'
26447 3' -58 NC_005357.1 + 19995 0.68 0.355849
Target:  5'- cGCGuagaaCUCGCCAACUUGCUcGGCa--- -3'
miRNA:   3'- -UGCug---GAGCGGUUGGACGA-CCGgaac -5'
26447 3' -58 NC_005357.1 + 28877 0.67 0.391277
Target:  5'- cACGuCCUCGCUgcuGGCguagUUGCUGGCCg-- -3'
miRNA:   3'- -UGCuGGAGCGG---UUG----GACGACCGGaac -5'
26447 3' -58 NC_005357.1 + 11366 0.67 0.404208
Target:  5'- gGCGACCugcUCGCCcggcaccucgguggcGACCUGaugGGCCa-- -3'
miRNA:   3'- -UGCUGG---AGCGG---------------UUGGACga-CCGGaac -5'
26447 3' -58 NC_005357.1 + 24748 0.67 0.416456
Target:  5'- cGCGGCCUCGaCCcaugcugucggaauGACCUGCcacgGGUCg-- -3'
miRNA:   3'- -UGCUGGAGC-GG--------------UUGGACGa---CCGGaac -5'
26447 3' -58 NC_005357.1 + 23003 0.67 0.419314
Target:  5'- --cGCCUgGUCGGCCUGCUGcugcGCCUg- -3'
miRNA:   3'- ugcUGGAgCGGUUGGACGAC----CGGAac -5'
26447 3' -58 NC_005357.1 + 20217 0.7 0.284662
Target:  5'- aGCGcCCgcgGCCGG-CUGUUGGCCUUGg -3'
miRNA:   3'- -UGCuGGag-CGGUUgGACGACCGGAAC- -5'
26447 3' -58 NC_005357.1 + 21177 0.7 0.277486
Target:  5'- cGCGGCCUgcUGCgCGGCCugcUGCUGGUCUg- -3'
miRNA:   3'- -UGCUGGA--GCG-GUUGG---ACGACCGGAac -5'
26447 3' -58 NC_005357.1 + 28673 0.7 0.250223
Target:  5'- gGCGGCCUCGCCAGCgCgGC-GcGCCa-- -3'
miRNA:   3'- -UGCUGGAGCGGUUG-GaCGaC-CGGaac -5'
26447 3' -58 NC_005357.1 + 4323 0.74 0.149637
Target:  5'- uUGACCUCcacgaugguGCCAGCCuugaUGCUGGCCg-- -3'
miRNA:   3'- uGCUGGAG---------CGGUUGG----ACGACCGGaac -5'
26447 3' -58 NC_005357.1 + 18261 0.73 0.15819
Target:  5'- cACGACCUgCGCCGagaACUUGCcGGCCg-- -3'
miRNA:   3'- -UGCUGGA-GCGGU---UGGACGaCCGGaac -5'
26447 3' -58 NC_005357.1 + 24448 0.72 0.20454
Target:  5'- cGCGGCCUCGgCGacauugacgccgacgACCUGCugcuUGGCCUg- -3'
miRNA:   3'- -UGCUGGAGCgGU---------------UGGACG----ACCGGAac -5'
26447 3' -58 NC_005357.1 + 37431 0.72 0.207866
Target:  5'- -gGACUgCGCCGACCUGCUGuucGCCa-- -3'
miRNA:   3'- ugCUGGaGCGGUUGGACGAC---CGGaac -5'
26447 3' -58 NC_005357.1 + 4382 0.71 0.219295
Target:  5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3'
miRNA:   3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5'
26447 3' -58 NC_005357.1 + 10917 0.71 0.225208
Target:  5'- gGCGACCUgccCGCCggUUUGCagGGCCUc- -3'
miRNA:   3'- -UGCUGGA---GCGGuuGGACGa-CCGGAac -5'
26447 3' -58 NC_005357.1 + 34993 0.71 0.23744
Target:  5'- -aGGCCgaaGCCGAaCUGCUGGCCg-- -3'
miRNA:   3'- ugCUGGag-CGGUUgGACGACCGGaac -5'
26447 3' -58 NC_005357.1 + 37609 0.71 0.241216
Target:  5'- gACGACggCGCCGGCCccgaccucuacaaGCUGGCCUa- -3'
miRNA:   3'- -UGCUGgaGCGGUUGGa------------CGACCGGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.