miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26447 3' -58 NC_005357.1 + 18354 0.66 0.438668
Target:  5'- gAUGACCaccuguUUGCCGGCggcgagGUUGGCCUUGc -3'
miRNA:   3'- -UGCUGG------AGCGGUUGga----CGACCGGAAC- -5'
26447 3' -58 NC_005357.1 + 1779 0.66 0.468629
Target:  5'- gACGcCCUCGCCGGCaC-GCcGGCCc-- -3'
miRNA:   3'- -UGCuGGAGCGGUUG-GaCGaCCGGaac -5'
26447 3' -58 NC_005357.1 + 6587 0.66 0.448535
Target:  5'- gACGACCccgaaaaacUCGCCAGaaaCUGCUcGCCa-- -3'
miRNA:   3'- -UGCUGG---------AGCGGUUg--GACGAcCGGaac -5'
26447 3' -58 NC_005357.1 + 744 0.66 0.438668
Target:  5'- cCGGCCggCGCCGccguaggcgGCCUGgUGGCUa-- -3'
miRNA:   3'- uGCUGGa-GCGGU---------UGGACgACCGGaac -5'
26447 3' -58 NC_005357.1 + 13034 0.66 0.437688
Target:  5'- gACGGCCUCGUCAucGCgUUGCUugagugcGGCCg-- -3'
miRNA:   3'- -UGCUGGAGCGGU--UG-GACGA-------CCGGaac -5'
26447 3' -58 NC_005357.1 + 28547 0.66 0.468629
Target:  5'- cACGACCUUG-CGGCC-GCcGGCCa-- -3'
miRNA:   3'- -UGCUGGAGCgGUUGGaCGaCCGGaac -5'
26447 3' -58 NC_005357.1 + 34465 0.66 0.468629
Target:  5'- gACGAacucauCgUUGCCGACCUGaaauaUGGCCgUGg -3'
miRNA:   3'- -UGCU------GgAGCGGUUGGACg----ACCGGaAC- -5'
26447 3' -58 NC_005357.1 + 2925 0.66 0.489175
Target:  5'- cAUGGCUcUGCCAACgCUacggcuuggcggGCUGGCCUUu -3'
miRNA:   3'- -UGCUGGaGCGGUUG-GA------------CGACCGGAAc -5'
26447 3' -58 NC_005357.1 + 13443 0.66 0.468629
Target:  5'- -aGGCC-CGCCAGCUUGgC-GGCCUc- -3'
miRNA:   3'- ugCUGGaGCGGUUGGAC-GaCCGGAac -5'
26447 3' -58 NC_005357.1 + 37181 0.66 0.448535
Target:  5'- cCGACC---CCGACCUGCcGGCCg-- -3'
miRNA:   3'- uGCUGGagcGGUUGGACGaCCGGaac -5'
26447 3' -58 NC_005357.1 + 5570 0.66 0.448535
Target:  5'- uCGACggCGCCAAC--GCUGGCCg-- -3'
miRNA:   3'- uGCUGgaGCGGUUGgaCGACCGGaac -5'
26447 3' -58 NC_005357.1 + 38337 0.66 0.438668
Target:  5'- aGCGccgcccACCUgGCCGGCCUGaUGGCUa-- -3'
miRNA:   3'- -UGC------UGGAgCGGUUGGACgACCGGaac -5'
26447 3' -58 NC_005357.1 + 23003 0.67 0.419314
Target:  5'- --cGCCUgGUCGGCCUGCUGcugcGCCUg- -3'
miRNA:   3'- ugcUGGAgCGGUUGGACGAC----CGGAac -5'
26447 3' -58 NC_005357.1 + 24748 0.67 0.416456
Target:  5'- cGCGGCCUCGaCCcaugcugucggaauGACCUGCcacgGGUCg-- -3'
miRNA:   3'- -UGCUGGAGC-GG--------------UUGGACGa---CCGGaac -5'
26447 3' -58 NC_005357.1 + 11366 0.67 0.404208
Target:  5'- gGCGACCugcUCGCCcggcaccucgguggcGACCUGaugGGCCa-- -3'
miRNA:   3'- -UGCUGG---AGCGG---------------UUGGACga-CCGGaac -5'
26447 3' -58 NC_005357.1 + 35749 0.67 0.413609
Target:  5'- uCGGCCUuggCGCCccacuuuuccuuggcGACCUGCucgaUGGCCUg- -3'
miRNA:   3'- uGCUGGA---GCGG---------------UUGGACG----ACCGGAac -5'
26447 3' -58 NC_005357.1 + 36816 0.67 0.400486
Target:  5'- cAUGAUuagcugCUUGCCGGCCuUGUccuUGGCCUUGu -3'
miRNA:   3'- -UGCUG------GAGCGGUUGG-ACG---ACCGGAAC- -5'
26447 3' -58 NC_005357.1 + 13083 0.67 0.382207
Target:  5'- -aGGCCgUCGCCAcuGCgCUGCgcGGCCUg- -3'
miRNA:   3'- ugCUGG-AGCGGU--UG-GACGa-CCGGAac -5'
26447 3' -58 NC_005357.1 + 13701 0.67 0.391277
Target:  5'- gACGGCCgCGCCgGACUUGCUG-CCg-- -3'
miRNA:   3'- -UGCUGGaGCGG-UUGGACGACcGGaac -5'
26447 3' -58 NC_005357.1 + 32988 0.67 0.382207
Target:  5'- cUGGCCgaacaGCCAGCCgUGCaGGCCgUGg -3'
miRNA:   3'- uGCUGGag---CGGUUGG-ACGaCCGGaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.