Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26447 | 3' | -58 | NC_005357.1 | + | 35749 | 0.67 | 0.413609 |
Target: 5'- uCGGCCUuggCGCCccacuuuuccuuggcGACCUGCucgaUGGCCUg- -3' miRNA: 3'- uGCUGGA---GCGG---------------UUGGACG----ACCGGAac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 24010 | 0.67 | 0.428926 |
Target: 5'- cCGACCUCGCCGgGCgUGC--GCCUg- -3' miRNA: 3'- uGCUGGAGCGGU-UGgACGacCGGAac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 28877 | 0.67 | 0.391277 |
Target: 5'- cACGuCCUCGCUgcuGGCguagUUGCUGGCCg-- -3' miRNA: 3'- -UGCuGGAGCGG---UUG----GACGACCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 19995 | 0.68 | 0.355849 |
Target: 5'- cGCGuagaaCUCGCCAACUUGCUcGGCa--- -3' miRNA: 3'- -UGCug---GAGCGGUUGGACGA-CCGgaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 34798 | 0.68 | 0.373278 |
Target: 5'- uUGACCUCGgCGGCCgGCUuGCCg-- -3' miRNA: 3'- uGCUGGAGCgGUUGGaCGAcCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 24622 | 0.68 | 0.339001 |
Target: 5'- cCGGCCUCGCCAucGCCgcGCUGcGCg--- -3' miRNA: 3'- uGCUGGAGCGGU--UGGa-CGAC-CGgaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 531 | 0.68 | 0.364491 |
Target: 5'- cCGACCgcgacagCGCCcGCaaGCUGGCCg-- -3' miRNA: 3'- uGCUGGa------GCGGuUGgaCGACCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 2300 | 0.69 | 0.291984 |
Target: 5'- cGCGGCCacgCGCC-GCCUGCUGcGCgUg- -3' miRNA: 3'- -UGCUGGa--GCGGuUGGACGAC-CGgAac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 1396 | 0.69 | 0.32274 |
Target: 5'- cACGGCUUCcucgcgcuuGUCGGCCUGgUGGCCg-- -3' miRNA: 3'- -UGCUGGAG---------CGGUUGGACgACCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 731 | 0.69 | 0.307067 |
Target: 5'- gGCGGCUUUGCCGACaacGCcGGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga-CGaCCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 27661 | 0.7 | 0.284662 |
Target: 5'- gACGACCaCGCCAucuggcgccGCCUGCUG-CCg-- -3' miRNA: 3'- -UGCUGGaGCGGU---------UGGACGACcGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 28673 | 0.7 | 0.250223 |
Target: 5'- gGCGGCCUCGCCAGCgCgGC-GcGCCa-- -3' miRNA: 3'- -UGCUGGAGCGGUUG-GaCGaC-CGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 21177 | 0.7 | 0.277486 |
Target: 5'- cGCGGCCUgcUGCgCGGCCugcUGCUGGUCUg- -3' miRNA: 3'- -UGCUGGA--GCG-GUUGG---ACGACCGGAac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 20217 | 0.7 | 0.284662 |
Target: 5'- aGCGcCCgcgGCCGG-CUGUUGGCCUUGg -3' miRNA: 3'- -UGCuGGag-CGGUUgGACGACCGGAAC- -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 20313 | 0.7 | 0.284662 |
Target: 5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3' miRNA: 3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 34192 | 0.7 | 0.284662 |
Target: 5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3' miRNA: 3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 8917 | 0.7 | 0.270455 |
Target: 5'- gGCGACCgagGCCAACgC-GCUGGCCc-- -3' miRNA: 3'- -UGCUGGag-CGGUUG-GaCGACCGGaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 480 | 0.7 | 0.284662 |
Target: 5'- uACGGCCgacgaucacCGCCGugCUGCUGGUg--- -3' miRNA: 3'- -UGCUGGa--------GCGGUugGACGACCGgaac -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 4382 | 0.71 | 0.219295 |
Target: 5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3' miRNA: 3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5' |
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26447 | 3' | -58 | NC_005357.1 | + | 10917 | 0.71 | 0.225208 |
Target: 5'- gGCGACCUgccCGCCggUUUGCagGGCCUc- -3' miRNA: 3'- -UGCUGGA---GCGGuuGGACGa-CCGGAac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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