miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26447 3' -58 NC_005357.1 + 1396 0.69 0.32274
Target:  5'- cACGGCUUCcucgcgcuuGUCGGCCUGgUGGCCg-- -3'
miRNA:   3'- -UGCUGGAG---------CGGUUGGACgACCGGaac -5'
26447 3' -58 NC_005357.1 + 1779 0.66 0.468629
Target:  5'- gACGcCCUCGCCGGCaC-GCcGGCCc-- -3'
miRNA:   3'- -UGCuGGAGCGGUUG-GaCGaCCGGaac -5'
26447 3' -58 NC_005357.1 + 35749 0.67 0.413609
Target:  5'- uCGGCCUuggCGCCccacuuuuccuuggcGACCUGCucgaUGGCCUg- -3'
miRNA:   3'- uGCUGGA---GCGG---------------UUGGACG----ACCGGAac -5'
26447 3' -58 NC_005357.1 + 13083 0.67 0.382207
Target:  5'- -aGGCCgUCGCCAcuGCgCUGCgcGGCCUg- -3'
miRNA:   3'- ugCUGG-AGCGGU--UG-GACGa-CCGGAac -5'
26447 3' -58 NC_005357.1 + 32988 0.67 0.382207
Target:  5'- cUGGCCgaacaGCCAGCCgUGCaGGCCgUGg -3'
miRNA:   3'- uGCUGGag---CGGUUGG-ACGaCCGGaAC- -5'
26447 3' -58 NC_005357.1 + 2497 0.67 0.382207
Target:  5'- cCGAUCUUcgagGCCGGCCUGCUG-CCg-- -3'
miRNA:   3'- uGCUGGAG----CGGUUGGACGACcGGaac -5'
26447 3' -58 NC_005357.1 + 34798 0.68 0.373278
Target:  5'- uUGACCUCGgCGGCCgGCUuGCCg-- -3'
miRNA:   3'- uGCUGGAGCgGUUGGaCGAcCGGaac -5'
26447 3' -58 NC_005357.1 + 6587 0.66 0.448535
Target:  5'- gACGACCccgaaaaacUCGCCAGaaaCUGCUcGCCa-- -3'
miRNA:   3'- -UGCUGG---------AGCGGUUg--GACGAcCGGaac -5'
26447 3' -58 NC_005357.1 + 24010 0.67 0.428926
Target:  5'- cCGACCUCGCCGgGCgUGC--GCCUg- -3'
miRNA:   3'- uGCUGGAGCGGU-UGgACGacCGGAac -5'
26447 3' -58 NC_005357.1 + 24622 0.68 0.339001
Target:  5'- cCGGCCUCGCCAucGCCgcGCUGcGCg--- -3'
miRNA:   3'- uGCUGGAGCGGU--UGGa-CGAC-CGgaac -5'
26447 3' -58 NC_005357.1 + 4323 0.74 0.149637
Target:  5'- uUGACCUCcacgaugguGCCAGCCuugaUGCUGGCCg-- -3'
miRNA:   3'- uGCUGGAG---------CGGUUGG----ACGACCGGaac -5'
26447 3' -58 NC_005357.1 + 37431 0.72 0.207866
Target:  5'- -gGACUgCGCCGACCUGCUGuucGCCa-- -3'
miRNA:   3'- ugCUGGaGCGGUUGGACGAC---CGGaac -5'
26447 3' -58 NC_005357.1 + 4382 0.71 0.219295
Target:  5'- gGCGACg--GCCGACUUGUcGGCCUUGa -3'
miRNA:   3'- -UGCUGgagCGGUUGGACGaCCGGAAC- -5'
26447 3' -58 NC_005357.1 + 21177 0.7 0.277486
Target:  5'- cGCGGCCUgcUGCgCGGCCugcUGCUGGUCUg- -3'
miRNA:   3'- -UGCUGGA--GCG-GUUGG---ACGACCGGAac -5'
26447 3' -58 NC_005357.1 + 20217 0.7 0.284662
Target:  5'- aGCGcCCgcgGCCGG-CUGUUGGCCUUGg -3'
miRNA:   3'- -UGCuGGag-CGGUUgGACGACCGGAAC- -5'
26447 3' -58 NC_005357.1 + 20313 0.7 0.284662
Target:  5'- gGCGGCCggUUGCgAugCggGCUGGCCUUc -3'
miRNA:   3'- -UGCUGG--AGCGgUugGa-CGACCGGAAc -5'
26447 3' -58 NC_005357.1 + 34192 0.7 0.284662
Target:  5'- aGCGACUUCGCCGACgaggGCacGGCCg-- -3'
miRNA:   3'- -UGCUGGAGCGGUUGga--CGa-CCGGaac -5'
26447 3' -58 NC_005357.1 + 13443 0.66 0.468629
Target:  5'- -aGGCC-CGCCAGCUUGgC-GGCCUc- -3'
miRNA:   3'- ugCUGGaGCGGUUGGAC-GaCCGGAac -5'
26447 3' -58 NC_005357.1 + 37181 0.66 0.448535
Target:  5'- cCGACC---CCGACCUGCcGGCCg-- -3'
miRNA:   3'- uGCUGGagcGGUUGGACGaCCGGaac -5'
26447 3' -58 NC_005357.1 + 5570 0.66 0.448535
Target:  5'- uCGACggCGCCAAC--GCUGGCCg-- -3'
miRNA:   3'- uGCUGgaGCGGUUGgaCGACCGGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.