Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26448 | 3' | -51 | NC_005357.1 | + | 19688 | 0.68 | 0.773501 |
Target: 5'- cGAUGUCGCGGCCcgCAU-GACCccggacggcaAGAUCg -3' miRNA: 3'- -CUGUAGCGUUGGa-GUAgCUGG----------UCUAG- -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 8348 | 0.67 | 0.794407 |
Target: 5'- ----cCGCGGCCUgGUCGAuagcgugcgUCAGAUCg -3' miRNA: 3'- cuguaGCGUUGGAgUAGCU---------GGUCUAG- -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 39709 | 0.67 | 0.814558 |
Target: 5'- cGACGUUGCGcaggugcgcccACUUCGUCGauucgucggGCCAGGUg -3' miRNA: 3'- -CUGUAGCGU-----------UGGAGUAGC---------UGGUCUAg -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 36622 | 0.67 | 0.814558 |
Target: 5'- cGCAgagCGCGACguuCUCGUCGAUcaacgcccaccgCAGAUCg -3' miRNA: 3'- cUGUa--GCGUUG---GAGUAGCUG------------GUCUAG- -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 34834 | 0.69 | 0.69591 |
Target: 5'- cGACAUUGCu-UCUCAcCGgggGCCAGGUCg -3' miRNA: 3'- -CUGUAGCGuuGGAGUaGC---UGGUCUAG- -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 16602 | 0.69 | 0.684443 |
Target: 5'- aGCAagGCGGCCUguacggcuaUAUCGGCCAGAc- -3' miRNA: 3'- cUGUagCGUUGGA---------GUAGCUGGUCUag -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 35040 | 0.69 | 0.67292 |
Target: 5'- cGGCcuUCGCGcgaaugGCCUUGcaccaggacUCGACCAGAUCg -3' miRNA: 3'- -CUGu-AGCGU------UGGAGU---------AGCUGGUCUAG- -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 18887 | 0.7 | 0.614911 |
Target: 5'- cGCAaaauUCGCAGCUUCcugCGccGCCAGAUCa -3' miRNA: 3'- cUGU----AGCGUUGGAGua-GC--UGGUCUAG- -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 9648 | 0.7 | 0.603314 |
Target: 5'- cGAgGUgCGCAACgUguUCGACCGGAUg -3' miRNA: 3'- -CUgUA-GCGUUGgAguAGCUGGUCUAg -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 1297 | 0.71 | 0.545941 |
Target: 5'- cGACAcCGCuuucgaccGCCUCAUCGGCCAuGAg- -3' miRNA: 3'- -CUGUaGCGu-------UGGAGUAGCUGGU-CUag -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 18975 | 0.75 | 0.351592 |
Target: 5'- cGCGggCGcCGACCUCAUCGACCuGAUg -3' miRNA: 3'- cUGUa-GC-GUUGGAGUAGCUGGuCUAg -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 2772 | 1.11 | 0.001295 |
Target: 5'- cGACAUCGCAACCUCAUCGACCAGAUCa -3' miRNA: 3'- -CUGUAGCGUUGGAGUAGCUGGUCUAG- -5' |
|||||||
26448 | 3' | -51 | NC_005357.1 | + | 8561 | 0.66 | 0.852208 |
Target: 5'- gGGCAUCGacgugGACUaugcCGACCAGAUCg -3' miRNA: 3'- -CUGUAGCg----UUGGaguaGCUGGUCUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home