Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26448 | 5' | -49.4 | NC_005357.1 | + | 39475 | 0.67 | 0.865123 |
Target: 5'- -cGAUCacgUGCUCGA--CGUGCCGCGc- -3' miRNA: 3'- uuUUAG---ACGAGCUacGCAUGGCGUuc -5' |
|||||||
26448 | 5' | -49.4 | NC_005357.1 | + | 9699 | 0.67 | 0.856262 |
Target: 5'- ----gCUGCUCaacGUGUACCGCGAc -3' miRNA: 3'- uuuuaGACGAGcuaCGCAUGGCGUUc -5' |
|||||||
26448 | 5' | -49.4 | NC_005357.1 | + | 39746 | 0.7 | 0.732019 |
Target: 5'- cGGcgCUGCUCGG-GCGUGCCGa--- -3' miRNA: 3'- uUUuaGACGAGCUaCGCAUGGCguuc -5' |
|||||||
26448 | 5' | -49.4 | NC_005357.1 | + | 37919 | 0.7 | 0.685679 |
Target: 5'- gAGGcgCUGCUCGGUGC--GCCagGCGAGg -3' miRNA: 3'- -UUUuaGACGAGCUACGcaUGG--CGUUC- -5' |
|||||||
26448 | 5' | -49.4 | NC_005357.1 | + | 5692 | 0.71 | 0.662094 |
Target: 5'- cAAAAUCUcGCUCGAUGacagACCGCcAGa -3' miRNA: 3'- -UUUUAGA-CGAGCUACgca-UGGCGuUC- -5' |
|||||||
26448 | 5' | -49.4 | NC_005357.1 | + | 28063 | 0.71 | 0.626505 |
Target: 5'- -cGGUCUGCUCGAacaGCGggcaggugGCCGCGGc -3' miRNA: 3'- uuUUAGACGAGCUa--CGCa-------UGGCGUUc -5' |
|||||||
26448 | 5' | -49.4 | NC_005357.1 | + | 31931 | 0.76 | 0.355617 |
Target: 5'- gGGGGUCuUGCacggCGAggGCGUGCCGCAGGa -3' miRNA: 3'- -UUUUAG-ACGa---GCUa-CGCAUGGCGUUC- -5' |
|||||||
26448 | 5' | -49.4 | NC_005357.1 | + | 2736 | 1.08 | 0.002948 |
Target: 5'- gAAAAUCUGCUCGAUGCGUACCGCAAGa -3' miRNA: 3'- -UUUUAGACGAGCUACGCAUGGCGUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home