Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26449 | 5' | -65 | NC_005357.1 | + | 15712 | 0.69 | 0.119742 |
Target: 5'- gUCCGCCUgggcaucgaacuGGCgcgaggccaUGCGCUCGACauaCCGCa -3' miRNA: 3'- aAGGCGGG------------CCG---------ACGCGAGCUG---GGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 15463 | 0.68 | 0.160553 |
Target: 5'- -gUCGUCCGGCaucuuCGC-CGGCCCGCa -3' miRNA: 3'- aaGGCGGGCCGac---GCGaGCUGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 14885 | 0.67 | 0.169208 |
Target: 5'- -gUUGCCCGGCuuucagggucUGCGCggCGAUCUGCu -3' miRNA: 3'- aaGGCGGGCCG----------ACGCGa-GCUGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 12903 | 0.71 | 0.084009 |
Target: 5'- -gUCGCCUuuGGCgaUGCGCUCGGCCgCGCc -3' miRNA: 3'- aaGGCGGG--CCG--ACGCGAGCUGG-GCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 12723 | 0.67 | 0.169208 |
Target: 5'- -gUCGCCCGGCccguugGUGCUggGugCCGCGc -3' miRNA: 3'- aaGGCGGGCCGa-----CGCGAg-CugGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 11659 | 0.67 | 0.187777 |
Target: 5'- -gCUGCCCGGCgGCcaGCcggCGGCCCuggGCGg -3' miRNA: 3'- aaGGCGGGCCGaCG--CGa--GCUGGG---CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 10749 | 0.68 | 0.164829 |
Target: 5'- -cUCGCCaagGGC-GCGCUCGacuucgGCCCGCa -3' miRNA: 3'- aaGGCGGg--CCGaCGCGAGC------UGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 10272 | 0.68 | 0.148318 |
Target: 5'- aUCCGCCgaccaucgggcCGGCgUGCGCUUGACgUGgGa -3' miRNA: 3'- aAGGCGG-----------GCCG-ACGCGAGCUGgGCgC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 9390 | 0.66 | 0.224598 |
Target: 5'- -gCCGCCC-GCcGCGC-CGACgUGCGc -3' miRNA: 3'- aaGGCGGGcCGaCGCGaGCUGgGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 9282 | 0.66 | 0.221216 |
Target: 5'- -cCCGguacaCCGGCUGCGCauugacuuccucggCGACCUgGCGg -3' miRNA: 3'- aaGGCg----GGCCGACGCGa-------------GCUGGG-CGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 4743 | 0.66 | 0.202861 |
Target: 5'- -gCCGCgcuauCCGGC-GCGCUgGuGCCCGCc -3' miRNA: 3'- aaGGCG-----GGCCGaCGCGAgC-UGGGCGc -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 4109 | 1.05 | 0.000171 |
Target: 5'- gUUCCGCCCGGCUGCGCUCGACCCGCGc -3' miRNA: 3'- -AAGGCGGGCCGACGCGAGCUGGGCGC- -5' |
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26449 | 5' | -65 | NC_005357.1 | + | 257 | 0.67 | 0.187777 |
Target: 5'- -gUCGCCCGGCaGCGUgaCGguGCCCaGCGa -3' miRNA: 3'- aaGGCGGGCCGaCGCGa-GC--UGGG-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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