Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2645 | 5' | -59.6 | NC_001491.2 | + | 115394 | 1.12 | 0.000706 |
Target: 5'- cGCCAGACCCAGGGCAGACAGCAGCUCg -3' miRNA: 3'- -CGGUCUGGGUCCCGUCUGUCGUCGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 32752 | 0.78 | 0.173632 |
Target: 5'- cCCAGGCuaCCGGGGCGGcgGCAGCAGCa- -3' miRNA: 3'- cGGUCUG--GGUCCCGUC--UGUCGUCGag -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 1497 | 0.73 | 0.322642 |
Target: 5'- cGUCGGGCuCCAGcagcgccacccGGCAGAacucgcuCAGCAGCUCg -3' miRNA: 3'- -CGGUCUG-GGUC-----------CCGUCU-------GUCGUCGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 44163 | 0.72 | 0.377371 |
Target: 5'- -aCAGACCCAGcGCGG-CGGCAGC-Cg -3' miRNA: 3'- cgGUCUGGGUCcCGUCuGUCGUCGaG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 4391 | 0.72 | 0.393875 |
Target: 5'- gGCCAGGggucCCCGgacGGGguGAgaAGCGGCUCg -3' miRNA: 3'- -CGGUCU----GGGU---CCCguCUg-UCGUCGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 22492 | 0.71 | 0.402301 |
Target: 5'- -gCAGACUCAGGGCugcuaAGACAgucaacaucacuGCAGCUUa -3' miRNA: 3'- cgGUCUGGGUCCCG-----UCUGU------------CGUCGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 110429 | 0.71 | 0.410841 |
Target: 5'- cGCCGGGCCCacucccgcuAGGGCGGAUgaGGUGGUg- -3' miRNA: 3'- -CGGUCUGGG---------UCCCGUCUG--UCGUCGag -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 31271 | 0.71 | 0.420363 |
Target: 5'- aGCCGGcgaaggcuauaccuuCCCcGGGCAGACccgGGCGGCUUc -3' miRNA: 3'- -CGGUCu--------------GGGuCCCGUCUG---UCGUCGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 12501 | 0.71 | 0.428252 |
Target: 5'- cGCgGGucCCCGGGGCGGggcggcgucGCGGCGGCg- -3' miRNA: 3'- -CGgUCu-GGGUCCCGUC---------UGUCGUCGag -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 109973 | 0.71 | 0.428252 |
Target: 5'- cGCCAGcucccGCUCGGcGGCAGugGCGGCGGCa- -3' miRNA: 3'- -CGGUC-----UGGGUC-CCGUC--UGUCGUCGag -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 98718 | 0.71 | 0.436228 |
Target: 5'- uGCUAugauuuuGuACCCAGGGCAGGCGGcCAGUa- -3' miRNA: 3'- -CGGU-------C-UGGGUCCCGUCUGUC-GUCGag -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 27092 | 0.71 | 0.446092 |
Target: 5'- gGCCAGGCCUccgcGGGCGGccCGGCGccGCUCc -3' miRNA: 3'- -CGGUCUGGGu---CCCGUCu-GUCGU--CGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 2133 | 0.7 | 0.464338 |
Target: 5'- gGCCAGGuCCCc-GGUcGACAGCAGCa- -3' miRNA: 3'- -CGGUCU-GGGucCCGuCUGUCGUCGag -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 113589 | 0.7 | 0.464338 |
Target: 5'- cGCUAGugauucGCgCAGGGCAGugAGCcgcGCUCc -3' miRNA: 3'- -CGGUC------UGgGUCCCGUCugUCGu--CGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 24144 | 0.7 | 0.492416 |
Target: 5'- aGUCAGAaCCAGGGgGGcuACAGCuauAGCUCu -3' miRNA: 3'- -CGGUCUgGGUCCCgUC--UGUCG---UCGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 1353 | 0.7 | 0.501948 |
Target: 5'- cGUCGGGCUCc-GGCAGGCA-CAGCUCc -3' miRNA: 3'- -CGGUCUGGGucCCGUCUGUcGUCGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 28598 | 0.69 | 0.511561 |
Target: 5'- -aCGGGCgCAGGGCccgcggGGAUAGCGGCa- -3' miRNA: 3'- cgGUCUGgGUCCCG------UCUGUCGUCGag -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 2548 | 0.69 | 0.511561 |
Target: 5'- cGCCAGGCCuCGGGGa--ACAGCugguugucgaugAGCUCc -3' miRNA: 3'- -CGGUCUGG-GUCCCgucUGUCG------------UCGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 72021 | 0.69 | 0.539848 |
Target: 5'- uGCCcccgauaAGGCCCAGGGCcucugccgcGAUAGCAaaggccgcGCUCa -3' miRNA: 3'- -CGG-------UCUGGGUCCCGu--------CUGUCGU--------CGAG- -5' |
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2645 | 5' | -59.6 | NC_001491.2 | + | 4822 | 0.68 | 0.599827 |
Target: 5'- aGCCGGagcggguGCgCCGGGGgaagcggcgcCGGAgCGGCAGCUCu -3' miRNA: 3'- -CGGUC-------UG-GGUCCC----------GUCU-GUCGUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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