miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2645 5' -59.6 NC_001491.2 + 1273 0.66 0.691828
Target:  5'- gGCCuGGGCcacgCCGGGGCucGGGCcgGGguGCUCa -3'
miRNA:   3'- -CGG-UCUG----GGUCCCG--UCUG--UCguCGAG- -5'
2645 5' -59.6 NC_001491.2 + 1353 0.7 0.501948
Target:  5'- cGUCGGGCUCc-GGCAGGCA-CAGCUCc -3'
miRNA:   3'- -CGGUCUGGGucCCGUCUGUcGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 1497 0.73 0.322642
Target:  5'- cGUCGGGCuCCAGcagcgccacccGGCAGAacucgcuCAGCAGCUCg -3'
miRNA:   3'- -CGGUCUG-GGUC-----------CCGUCU-------GUCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 2083 0.68 0.610958
Target:  5'- cGCCuggcGGAgCCCAGGcGCAGGCAgagguacucgacGCAGC-Cg -3'
miRNA:   3'- -CGG----UCU-GGGUCC-CGUCUGU------------CGUCGaG- -5'
2645 5' -59.6 NC_001491.2 + 2133 0.7 0.464338
Target:  5'- gGCCAGGuCCCc-GGUcGACAGCAGCa- -3'
miRNA:   3'- -CGGUCU-GGGucCCGuCUGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 2241 0.68 0.600838
Target:  5'- -gCGGuucCCCAGGGCcGcCAGCAGCg- -3'
miRNA:   3'- cgGUCu--GGGUCCCGuCuGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 2548 0.69 0.511561
Target:  5'- cGCCAGGCCuCGGGGa--ACAGCugguugucgaugAGCUCc -3'
miRNA:   3'- -CGGUCUGG-GUCCCgucUGUCG------------UCGAG- -5'
2645 5' -59.6 NC_001491.2 + 4391 0.72 0.393875
Target:  5'- gGCCAGGggucCCCGgacGGGguGAgaAGCGGCUCg -3'
miRNA:   3'- -CGGUCU----GGGU---CCCguCUg-UCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 4822 0.68 0.599827
Target:  5'- aGCCGGagcggguGCgCCGGGGgaagcggcgcCGGAgCGGCAGCUCu -3'
miRNA:   3'- -CGGUC-------UG-GGUCCC----------GUCU-GUCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 5322 0.68 0.610958
Target:  5'- aGCCGGGCugggugCCGGGGacgccggcuGGGCGGCAGC-Cg -3'
miRNA:   3'- -CGGUCUG------GGUCCCg--------UCUGUCGUCGaG- -5'
2645 5' -59.6 NC_001491.2 + 11491 0.66 0.721578
Target:  5'- uGCCuGGCCCcucuGGGguGGgGGUcaggggAGCUCu -3'
miRNA:   3'- -CGGuCUGGGu---CCCguCUgUCG------UCGAG- -5'
2645 5' -59.6 NC_001491.2 + 12501 0.71 0.428252
Target:  5'- cGCgGGucCCCGGGGCGGggcggcgucGCGGCGGCg- -3'
miRNA:   3'- -CGgUCu-GGGUCCCGUC---------UGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 22492 0.71 0.402301
Target:  5'- -gCAGACUCAGGGCugcuaAGACAgucaacaucacuGCAGCUUa -3'
miRNA:   3'- cgGUCUGGGUCCCG-----UCUGU------------CGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 23066 0.66 0.715675
Target:  5'- aGCCAGGCCCAGGuccGCGGGuuccacaacgggaaaUugGGCGGCc- -3'
miRNA:   3'- -CGGUCUGGGUCC---CGUCU---------------G--UCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 24144 0.7 0.492416
Target:  5'- aGUCAGAaCCAGGGgGGcuACAGCuauAGCUCu -3'
miRNA:   3'- -CGGUCUgGGUCCCgUC--UGUCG---UCGAG- -5'
2645 5' -59.6 NC_001491.2 + 24615 0.67 0.641379
Target:  5'- uCCcGcCCCGGGGCGGccgcugccGCGGCGGCg- -3'
miRNA:   3'- cGGuCuGGGUCCCGUC--------UGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 27092 0.71 0.446092
Target:  5'- gGCCAGGCCUccgcGGGCGGccCGGCGccGCUCc -3'
miRNA:   3'- -CGGUCUGGGu---CCCGUCu-GUCGU--CGAG- -5'
2645 5' -59.6 NC_001491.2 + 28598 0.69 0.511561
Target:  5'- -aCGGGCgCAGGGCccgcggGGAUAGCGGCa- -3'
miRNA:   3'- cgGUCUGgGUCCCG------UCUGUCGUCGag -5'
2645 5' -59.6 NC_001491.2 + 31271 0.71 0.420363
Target:  5'- aGCCGGcgaaggcuauaccuuCCCcGGGCAGACccgGGCGGCUUc -3'
miRNA:   3'- -CGGUCu--------------GGGuCCCGUCUG---UCGUCGAG- -5'
2645 5' -59.6 NC_001491.2 + 31747 0.67 0.681802
Target:  5'- aGCCAGAacaugUUCGGGGUGGACGacGCuccGCUCu -3'
miRNA:   3'- -CGGUCU-----GGGUCCCGUCUGU--CGu--CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.