miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 22541 0.67 0.565288
Target:  5'- ---uGCCaCGGCCAagaaGGCGCGCGAc- -3'
miRNA:   3'- gaugUGGaGCUGGUg---CCGCGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 22925 0.66 0.576176
Target:  5'- -aGCACaa-GACCACGGUuCGCAGcGGc -3'
miRNA:   3'- gaUGUGgagCUGGUGCCGcGCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 23231 0.66 0.609085
Target:  5'- ---gGCCUCGGCCACcgacCGCGCcucgcuGGGg -3'
miRNA:   3'- gaugUGGAGCUGGUGcc--GCGCGu-----UCC- -5'
26450 3' -56.4 NC_005357.1 + 23555 0.67 0.541536
Target:  5'- ---gGCCUCGGCCGacaucgccggcaGGUGCggGCGGGGg -3'
miRNA:   3'- gaugUGGAGCUGGUg-----------CCGCG--CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 24016 0.68 0.460541
Target:  5'- -gGCGCgUCGGCCAauucagcgaaGGCGaCGCGAcGGa -3'
miRNA:   3'- gaUGUGgAGCUGGUg---------CCGC-GCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 24103 0.69 0.440802
Target:  5'- -gGCACCcCGcuaCAUGcGCGCGUAGGGg -3'
miRNA:   3'- gaUGUGGaGCug-GUGC-CGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 24161 0.76 0.160634
Target:  5'- -aGCGCCUCGACgGCuGCGCGCuucGGc -3'
miRNA:   3'- gaUGUGGAGCUGgUGcCGCGCGuu-CC- -5'
26450 3' -56.4 NC_005357.1 + 24626 0.68 0.480738
Target:  5'- -gGCACgUCGAaccaCAUGGCGUGCcggcGGGc -3'
miRNA:   3'- gaUGUGgAGCUg---GUGCCGCGCGu---UCC- -5'
26450 3' -56.4 NC_005357.1 + 25472 0.66 0.609085
Target:  5'- -cGCGCCUcaCGAUgAgGGCGCGCucgugcuuggucAGGGu -3'
miRNA:   3'- gaUGUGGA--GCUGgUgCCGCGCG------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 25787 0.67 0.554454
Target:  5'- ---gGCCgCGAUgcgCGCGGCGCGCucGGu -3'
miRNA:   3'- gaugUGGaGCUG---GUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 26263 0.67 0.529783
Target:  5'- -gGCACCcgcCGGCCugGucggcucgcgcaucGCGCGCGAuGGa -3'
miRNA:   3'- gaUGUGGa--GCUGGugC--------------CGCGCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 26364 0.69 0.440802
Target:  5'- -gGCGCCgcgcgcggCGGCCACGuGCGCGaacuGGc -3'
miRNA:   3'- gaUGUGGa-------GCUGGUGC-CGCGCguu-CC- -5'
26450 3' -56.4 NC_005357.1 + 26972 0.71 0.317464
Target:  5'- -gGCAgCUUCGGCCAagGGCGCGuCAAGa -3'
miRNA:   3'- gaUGU-GGAGCUGGUg-CCGCGC-GUUCc -5'
26450 3' -56.4 NC_005357.1 + 27487 0.67 0.554454
Target:  5'- -aGCAUCgcCGAgUugGGCGCGCAGucGGc -3'
miRNA:   3'- gaUGUGGa-GCUgGugCCGCGCGUU--CC- -5'
26450 3' -56.4 NC_005357.1 + 27504 0.71 0.325355
Target:  5'- -gGCgGCCUCGGCCGCcagcuucucGGCGCGguCGGGGu -3'
miRNA:   3'- gaUG-UGGAGCUGGUG---------CCGCGC--GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 28043 0.73 0.232103
Target:  5'- gCUACGCCUaCGuuCCGCGGCGCGgAugcccccgccuuccAGGa -3'
miRNA:   3'- -GAUGUGGA-GCu-GGUGCCGCGCgU--------------UCC- -5'
26450 3' -56.4 NC_005357.1 + 28223 0.66 0.576176
Target:  5'- -cACGCCgaCGACCACGcGCgggucggacuGCGCcAGGc -3'
miRNA:   3'- gaUGUGGa-GCUGGUGC-CG----------CGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 28554 0.68 0.460541
Target:  5'- uUGCgGCCgcCGGCCaucGCGGCGCGCAc-- -3'
miRNA:   3'- gAUG-UGGa-GCUGG---UGCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 28673 0.68 0.480738
Target:  5'- -gGCgGCCUCG-CCagcGCGGCGCGCcacgucguucacAAGGu -3'
miRNA:   3'- gaUG-UGGAGCuGG---UGCCGCGCG------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 28740 0.68 0.470584
Target:  5'- -aGCGCCUUGGCaucguccagCGCGGUGCGCuucucGGc -3'
miRNA:   3'- gaUGUGGAGCUG---------GUGCCGCGCGuu---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.