miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 13874 0.71 0.302115
Target:  5'- -cGCGCCgcgaUGGCCgGCGGC-CGCAAGGu -3'
miRNA:   3'- gaUGUGGa---GCUGG-UGCCGcGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 14147 0.67 0.507617
Target:  5'- uCUGCGCCgugucccagcgcgCGGUCAUGGUGCGCAAcauGGu -3'
miRNA:   3'- -GAUGUGGa------------GCUGGUGCCGCGCGUU---CC- -5'
26450 3' -56.4 NC_005357.1 + 14605 0.69 0.421553
Target:  5'- -gGCGCC---ACCGCGggcagcGCGCGCGAGGa -3'
miRNA:   3'- gaUGUGGagcUGGUGC------CGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 14661 0.76 0.143851
Target:  5'- uUGCACCUUGGCCugGGUGCGgGu-- -3'
miRNA:   3'- gAUGUGGAGCUGGugCCGCGCgUucc -5'
26450 3' -56.4 NC_005357.1 + 14810 0.66 0.609085
Target:  5'- cCUGCACCUCG---GCGGCGCuGCc--- -3'
miRNA:   3'- -GAUGUGGAGCuggUGCCGCG-CGuucc -5'
26450 3' -56.4 NC_005357.1 + 14999 0.7 0.349898
Target:  5'- cCUGCgGCCgcCGGgCGCGGUGCGCcAGGc -3'
miRNA:   3'- -GAUG-UGGa-GCUgGUGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 15164 0.66 0.619004
Target:  5'- aCUGCgguucauuGCCUCGGCCAagagccUGGgGCGCcggcuggacagcaAAGGa -3'
miRNA:   3'- -GAUG--------UGGAGCUGGU------GCCgCGCG-------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 15267 0.66 0.576176
Target:  5'- -gGCAUC-CGcgUGCGGCGCGUggGGg -3'
miRNA:   3'- gaUGUGGaGCugGUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 15812 0.73 0.240125
Target:  5'- uUAC-CCUCGGCCACcacCGCGCAGGa -3'
miRNA:   3'- gAUGuGGAGCUGGUGcc-GCGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 16406 0.66 0.587111
Target:  5'- --gUugCUCGAaguaggaCACGGC-CGCGGGGu -3'
miRNA:   3'- gauGugGAGCUg------GUGCCGcGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 16696 0.67 0.554454
Target:  5'- -aGgGCCgUGACCACGuaGCGguAGGu -3'
miRNA:   3'- gaUgUGGaGCUGGUGCcgCGCguUCC- -5'
26450 3' -56.4 NC_005357.1 + 16846 0.67 0.543682
Target:  5'- cCUGgGCCgcaGACCGCGGCGUaCAAc- -3'
miRNA:   3'- -GAUgUGGag-CUGGUGCCGCGcGUUcc -5'
26450 3' -56.4 NC_005357.1 + 18286 0.66 0.587111
Target:  5'- -gGCGCUg-GGCCA-GGCGCGCAGccGGc -3'
miRNA:   3'- gaUGUGGagCUGGUgCCGCGCGUU--CC- -5'
26450 3' -56.4 NC_005357.1 + 18893 0.7 0.393653
Target:  5'- -gAgGCCaUCGACCGCGuGCGcCGCcuGGa -3'
miRNA:   3'- gaUgUGG-AGCUGGUGC-CGC-GCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 19000 0.66 0.586015
Target:  5'- -cGCAUCcCGGCCGgcgucgcacugacCGGCGCGCucaucAAGGu -3'
miRNA:   3'- gaUGUGGaGCUGGU-------------GCCGCGCG-----UUCC- -5'
26450 3' -56.4 NC_005357.1 + 19539 0.68 0.501356
Target:  5'- gUugGCCUCGAUgACGGUcauGuCGuCGAGGa -3'
miRNA:   3'- gAugUGGAGCUGgUGCCG---C-GC-GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 20307 0.8 0.079397
Target:  5'- --cCugUUCGACCGCGGCGCGCu-GGa -3'
miRNA:   3'- gauGugGAGCUGGUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 22313 0.67 0.532979
Target:  5'- -gGCA-UUCGACgACGGUGUGCuGGGc -3'
miRNA:   3'- gaUGUgGAGCUGgUGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 22431 0.67 0.529783
Target:  5'- -cACGCCUUGACgGCGGCGgacuCGUccaguucgggaaucGAGGu -3'
miRNA:   3'- gaUGUGGAGCUGgUGCCGC----GCG--------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 22487 0.73 0.233934
Target:  5'- ---uGCCUCGuCCACGGC-CGaCAAGGa -3'
miRNA:   3'- gaugUGGAGCuGGUGCCGcGC-GUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.