miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 8116 0.7 0.384622
Target:  5'- cCUGCACCgcgCGGCCgGCguugguugugGGCGUGCGGGu -3'
miRNA:   3'- -GAUGUGGa--GCUGG-UG----------CCGCGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 8585 0.66 0.620107
Target:  5'- -gACACgaCGGUCACGGCGacCGUggGGa -3'
miRNA:   3'- gaUGUGgaGCUGGUGCCGC--GCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 8619 0.71 0.325355
Target:  5'- uUGCGCuuCUCGGCCgcuGCGGUG-GCGAGGu -3'
miRNA:   3'- gAUGUG--GAGCUGG---UGCCGCgCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 8688 0.68 0.490996
Target:  5'- -cGCACCUCGGCguUGGUGUacugGCcGGGu -3'
miRNA:   3'- gaUGUGGAGCUGguGCCGCG----CGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 8727 0.71 0.325355
Target:  5'- -cGCACCUUGAgccgggacaCCAgGGCGCGCGc-- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 8861 0.68 0.450612
Target:  5'- gUugGCCUCGgucGCCACGaaGCGgGCGcGGg -3'
miRNA:   3'- gAugUGGAGC---UGGUGC--CGCgCGUuCC- -5'
26450 3' -56.4 NC_005357.1 + 8981 0.73 0.227878
Target:  5'- -aACGCCUCGAUUuccuCGcCGCGCGGGGg -3'
miRNA:   3'- gaUGUGGAGCUGGu---GCcGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 9326 0.68 0.480738
Target:  5'- -cGCACgUCGG-CGCGGCGgGCGGcGGc -3'
miRNA:   3'- gaUGUGgAGCUgGUGCCGCgCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 9721 0.71 0.302115
Target:  5'- aUACGCCUCGaaGCCGCGGgcgaacugcuCGUGguGGGc -3'
miRNA:   3'- gAUGUGGAGC--UGGUGCC----------GCGCguUCC- -5'
26450 3' -56.4 NC_005357.1 + 9882 0.69 0.421553
Target:  5'- gCUGCuuCUCGGCCA-GGCGCGUg--- -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGCGCGuucc -5'
26450 3' -56.4 NC_005357.1 + 9974 0.68 0.501356
Target:  5'- --cCACCUCGcAgUAgGGgGCGUAGGGg -3'
miRNA:   3'- gauGUGGAGC-UgGUgCCgCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 10576 0.7 0.384622
Target:  5'- -aGCGCCUCGGgcguaguacCCA-GGCGCGCAGc- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 10686 0.69 0.431115
Target:  5'- uUGCGUCUUGACgGCaGCGCGCAcGGc -3'
miRNA:   3'- gAUGUGGAGCUGgUGcCGCGCGUuCC- -5'
26450 3' -56.4 NC_005357.1 + 10743 0.68 0.480738
Target:  5'- uUGCugCUCG-CCAagGGCGCGCucGa -3'
miRNA:   3'- gAUGugGAGCuGGUg-CCGCGCGuuCc -5'
26450 3' -56.4 NC_005357.1 + 11100 0.66 0.583826
Target:  5'- -aGCACCuugUCGGCUGCGGCcaauugguucaaacGUGCGAGc -3'
miRNA:   3'- gaUGUGG---AGCUGGUGCCG--------------CGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 12534 0.7 0.384622
Target:  5'- gUGCugCUCGACCuCGGCGuCGguGa- -3'
miRNA:   3'- gAUGugGAGCUGGuGCCGC-GCguUcc -5'
26450 3' -56.4 NC_005357.1 + 12877 0.67 0.526594
Target:  5'- -gAUACCcCGAgCACGGCGUGgguguccucugcggcCAGGGg -3'
miRNA:   3'- gaUGUGGaGCUgGUGCCGCGC---------------GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 13153 0.75 0.174359
Target:  5'- aCUGCGCCUCGAUguCGGCcagugucggccGCGCuGGGc -3'
miRNA:   3'- -GAUGUGGAGCUGguGCCG-----------CGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 13344 0.68 0.460541
Target:  5'- -cGgGCCU-GACCuCGGCGCcCGAGGa -3'
miRNA:   3'- gaUgUGGAgCUGGuGCCGCGcGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 13610 0.71 0.333392
Target:  5'- -cGCaACC-CGACgACGGCGCGCu-GGc -3'
miRNA:   3'- gaUG-UGGaGCUGgUGCCGCGCGuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.