miRNA display CGI


Results 21 - 40 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 30407 0.71 0.341573
Target:  5'- -aAgACCUCGccgGCCACGGCcGCGCugcuGGc -3'
miRNA:   3'- gaUgUGGAGC---UGGUGCCG-CGCGuu--CC- -5'
26450 3' -56.4 NC_005357.1 + 29759 0.68 0.450612
Target:  5'- ---gGCCUCGGCUgcugccagGCGcGUGCGCGAGa -3'
miRNA:   3'- gaugUGGAGCUGG--------UGC-CGCGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 29422 0.67 0.543682
Target:  5'- aCUGCGCUgcgCGGCCuguacgagaACGGCGgGCGGu- -3'
miRNA:   3'- -GAUGUGGa--GCUGG---------UGCCGCgCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 29382 0.69 0.440802
Target:  5'- -aGC-CCUCgGACU-CGGCGCGguAGGc -3'
miRNA:   3'- gaUGuGGAG-CUGGuGCCGCGCguUCC- -5'
26450 3' -56.4 NC_005357.1 + 29117 0.7 0.37573
Target:  5'- cCUACGCCgccuacaacgcCGGCCcCGGCGCGCu--- -3'
miRNA:   3'- -GAUGUGGa----------GCUGGuGCCGCGCGuucc -5'
26450 3' -56.4 NC_005357.1 + 29117 0.68 0.470584
Target:  5'- uUGCugC-CGGUCAC-GCGCGCGAGGc -3'
miRNA:   3'- gAUGugGaGCUGGUGcCGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 29030 0.66 0.619004
Target:  5'- -cGCGCUUCGGCCAggucgauacccacCGGCG-GCucguAGGc -3'
miRNA:   3'- gaUGUGGAGCUGGU-------------GCCGCgCGu---UCC- -5'
26450 3' -56.4 NC_005357.1 + 28745 0.67 0.565288
Target:  5'- -gACGCCgaCGACauccuCACGGUGCGCGgucauaucaccaAGGa -3'
miRNA:   3'- gaUGUGGa-GCUG-----GUGCCGCGCGU------------UCC- -5'
26450 3' -56.4 NC_005357.1 + 28740 0.68 0.470584
Target:  5'- -aGCGCCUUGGCaucguccagCGCGGUGCGCuucucGGc -3'
miRNA:   3'- gaUGUGGAGCUG---------GUGCCGCGCGuu---CC- -5'
26450 3' -56.4 NC_005357.1 + 28673 0.68 0.480738
Target:  5'- -gGCgGCCUCG-CCagcGCGGCGCGCcacgucguucacAAGGu -3'
miRNA:   3'- gaUG-UGGAGCuGG---UGCCGCGCG------------UUCC- -5'
26450 3' -56.4 NC_005357.1 + 28554 0.68 0.460541
Target:  5'- uUGCgGCCgcCGGCCaucGCGGCGCGCAc-- -3'
miRNA:   3'- gAUG-UGGa-GCUGG---UGCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 28223 0.66 0.576176
Target:  5'- -cACGCCgaCGACCACGcGCgggucggacuGCGCcAGGc -3'
miRNA:   3'- gaUGUGGa-GCUGGUGC-CG----------CGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 28043 0.73 0.232103
Target:  5'- gCUACGCCUaCGuuCCGCGGCGCGgAugcccccgccuuccAGGa -3'
miRNA:   3'- -GAUGUGGA-GCu-GGUGCCGCGCgU--------------UCC- -5'
26450 3' -56.4 NC_005357.1 + 27504 0.71 0.325355
Target:  5'- -gGCgGCCUCGGCCGCcagcuucucGGCGCGguCGGGGu -3'
miRNA:   3'- gaUG-UGGAGCUGGUG---------CCGCGC--GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 27487 0.67 0.554454
Target:  5'- -aGCAUCgcCGAgUugGGCGCGCAGucGGc -3'
miRNA:   3'- gaUGUGGa-GCUgGugCCGCGCGUU--CC- -5'
26450 3' -56.4 NC_005357.1 + 26972 0.71 0.317464
Target:  5'- -gGCAgCUUCGGCCAagGGCGCGuCAAGa -3'
miRNA:   3'- gaUGU-GGAGCUGGUg-CCGCGC-GUUCc -5'
26450 3' -56.4 NC_005357.1 + 26364 0.69 0.440802
Target:  5'- -gGCGCCgcgcgcggCGGCCACGuGCGCGaacuGGc -3'
miRNA:   3'- gaUGUGGa-------GCUGGUGC-CGCGCguu-CC- -5'
26450 3' -56.4 NC_005357.1 + 26263 0.67 0.529783
Target:  5'- -gGCACCcgcCGGCCugGucggcucgcgcaucGCGCGCGAuGGa -3'
miRNA:   3'- gaUGUGGa--GCUGGugC--------------CGCGCGUU-CC- -5'
26450 3' -56.4 NC_005357.1 + 25787 0.67 0.554454
Target:  5'- ---gGCCgCGAUgcgCGCGGCGCGCucGGu -3'
miRNA:   3'- gaugUGGaGCUG---GUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 25472 0.66 0.609085
Target:  5'- -cGCGCCUcaCGAUgAgGGCGCGCucgugcuuggucAGGGu -3'
miRNA:   3'- gaUGUGGA--GCUGgUgCCGCGCG------------UUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.