miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 13874 0.71 0.302115
Target:  5'- -cGCGCCgcgaUGGCCgGCGGC-CGCAAGGu -3'
miRNA:   3'- gaUGUGGa---GCUGG-UGCCGcGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 7960 0.71 0.309717
Target:  5'- uUGC-CCgUGGCCuCGGCGCGCAucGGGu -3'
miRNA:   3'- gAUGuGGaGCUGGuGCCGCGCGU--UCC- -5'
26450 3' -56.4 NC_005357.1 + 26972 0.71 0.317464
Target:  5'- -gGCAgCUUCGGCCAagGGCGCGuCAAGa -3'
miRNA:   3'- gaUGU-GGAGCUGGUg-CCGCGC-GUUCc -5'
26450 3' -56.4 NC_005357.1 + 8619 0.71 0.325355
Target:  5'- uUGCGCuuCUCGGCCgcuGCGGUG-GCGAGGu -3'
miRNA:   3'- gAUGUG--GAGCUGG---UGCCGCgCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 27504 0.71 0.325355
Target:  5'- -gGCgGCCUCGGCCGCcagcuucucGGCGCGguCGGGGu -3'
miRNA:   3'- gaUG-UGGAGCUGGUG---------CCGCGC--GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 8727 0.71 0.325355
Target:  5'- -cGCACCUUGAgccgggacaCCAgGGCGCGCGc-- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 13610 0.71 0.333392
Target:  5'- -cGCaACC-CGACgACGGCGCGCu-GGc -3'
miRNA:   3'- gaUG-UGGaGCUGgUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 30407 0.71 0.341573
Target:  5'- -aAgACCUCGccgGCCACGGCcGCGCugcuGGc -3'
miRNA:   3'- gaUgUGGAGC---UGGUGCCG-CGCGuu--CC- -5'
26450 3' -56.4 NC_005357.1 + 14999 0.7 0.349898
Target:  5'- cCUGCgGCCgcCGGgCGCGGUGCGCcAGGc -3'
miRNA:   3'- -GAUG-UGGa-GCUgGUGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 29117 0.7 0.37573
Target:  5'- cCUACGCCgccuacaacgcCGGCCcCGGCGCGCu--- -3'
miRNA:   3'- -GAUGUGGa----------GCUGGuGCCGCGCGuucc -5'
26450 3' -56.4 NC_005357.1 + 8116 0.7 0.384622
Target:  5'- cCUGCACCgcgCGGCCgGCguugguugugGGCGUGCGGGu -3'
miRNA:   3'- -GAUGUGGa--GCUGG-UG----------CCGCGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 12534 0.7 0.384622
Target:  5'- gUGCugCUCGACCuCGGCGuCGguGa- -3'
miRNA:   3'- gAUGugGAGCUGGuGCCGC-GCguUcc -5'
26450 3' -56.4 NC_005357.1 + 10576 0.7 0.384622
Target:  5'- -aGCGCCUCGGgcguaguacCCA-GGCGCGCAGc- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 33774 0.7 0.393653
Target:  5'- gCUGCACacagCGAgUACGGCGCGgccuGGGg -3'
miRNA:   3'- -GAUGUGga--GCUgGUGCCGCGCgu--UCC- -5'
26450 3' -56.4 NC_005357.1 + 7080 0.7 0.393653
Target:  5'- -gACGCCgCGGCCuacccACGGCGCGCc--- -3'
miRNA:   3'- gaUGUGGaGCUGG-----UGCCGCGCGuucc -5'
26450 3' -56.4 NC_005357.1 + 18893 0.7 0.393653
Target:  5'- -gAgGCCaUCGACCGCGuGCGcCGCcuGGa -3'
miRNA:   3'- gaUgUGG-AGCUGGUGC-CGC-GCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 2035 0.69 0.411184
Target:  5'- -cGCGCaggCGAUagaaCACGGCGCGCAauuccucGGGg -3'
miRNA:   3'- gaUGUGga-GCUG----GUGCCGCGCGU-------UCC- -5'
26450 3' -56.4 NC_005357.1 + 6872 0.69 0.412121
Target:  5'- uCUugGCCUCGAacagaACGGgGaaaGCGAGGc -3'
miRNA:   3'- -GAugUGGAGCUgg---UGCCgCg--CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 31499 0.69 0.412121
Target:  5'- -cAUACCUUG-CCGcCGGCGUGCugcuGGGc -3'
miRNA:   3'- gaUGUGGAGCuGGU-GCCGCGCGu---UCC- -5'
26450 3' -56.4 NC_005357.1 + 9882 0.69 0.421553
Target:  5'- gCUGCuuCUCGGCCA-GGCGCGUg--- -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGCGCGuucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.