miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 41810 0.67 0.532979
Target:  5'- -gACGCCgUGuCCACGGCGCuGCu-GGc -3'
miRNA:   3'- gaUGUGGaGCuGGUGCCGCG-CGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 41062 0.73 0.240125
Target:  5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3'
miRNA:   3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 40833 0.66 0.619004
Target:  5'- -aACGCaCUCGACCACcaggaaGGCgGCGgccacuaCAAGGa -3'
miRNA:   3'- gaUGUG-GAGCUGGUG------CCG-CGC-------GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 40210 0.68 0.490996
Target:  5'- uUAUACCgCGA-CAUGGaGCGCGAGGc -3'
miRNA:   3'- gAUGUGGaGCUgGUGCCgCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 39983 0.66 0.620107
Target:  5'- -aGCGCCUgGGCCGCaguuucGGCGCcuucaaauCGAGGu -3'
miRNA:   3'- gaUGUGGAgCUGGUG------CCGCGc-------GUUCC- -5'
26450 3' -56.4 NC_005357.1 + 38261 1.1 0.000552
Target:  5'- gCUACACCUCGACCACGGCGCGCAAGGu -3'
miRNA:   3'- -GAUGUGGAGCUGGUGCCGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 37826 0.67 0.554454
Target:  5'- aUugGCCUggcUGACCugGGCGgcauCGCAuaacuAGGa -3'
miRNA:   3'- gAugUGGA---GCUGGugCCGC----GCGU-----UCC- -5'
26450 3' -56.4 NC_005357.1 + 36947 0.74 0.20171
Target:  5'- -gGCACCUCGACCagaccaucaacgaccGCGGCGUGau-GGu -3'
miRNA:   3'- gaUGUGGAGCUGG---------------UGCCGCGCguuCC- -5'
26450 3' -56.4 NC_005357.1 + 36679 0.74 0.221955
Target:  5'- -gGCGCaCUCGcuGCC-CGGCGCGCuGGGc -3'
miRNA:   3'- gaUGUG-GAGC--UGGuGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 36592 0.66 0.598083
Target:  5'- --cCACUUCGACCgcACGGUGCuGCGGc- -3'
miRNA:   3'- gauGUGGAGCUGG--UGCCGCG-CGUUcc -5'
26450 3' -56.4 NC_005357.1 + 35793 0.66 0.587111
Target:  5'- -gACACUcCGGCCAa-GCGCGCGAa- -3'
miRNA:   3'- gaUGUGGaGCUGGUgcCGCGCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 34616 0.67 0.522353
Target:  5'- -cGCGCCUCGACCAUaucaGCGaguGGGa -3'
miRNA:   3'- gaUGUGGAGCUGGUGccg-CGCgu-UCC- -5'
26450 3' -56.4 NC_005357.1 + 34350 0.74 0.224309
Target:  5'- uUGgGCCUcccauaucaaggcagCGACCugGGCGCGCGucauGGa -3'
miRNA:   3'- gAUgUGGA---------------GCUGGugCCGCGCGUu---CC- -5'
26450 3' -56.4 NC_005357.1 + 34344 0.68 0.450612
Target:  5'- gUACA--UCGACUACGuGCGCGCcuuGGGc -3'
miRNA:   3'- gAUGUggAGCUGGUGC-CGCGCGu--UCC- -5'
26450 3' -56.4 NC_005357.1 + 34178 0.67 0.51181
Target:  5'- -aACACCUgGGCCGCuugaaGCGCAAGc -3'
miRNA:   3'- gaUGUGGAgCUGGUGccg--CGCGUUCc -5'
26450 3' -56.4 NC_005357.1 + 33774 0.7 0.393653
Target:  5'- gCUGCACacagCGAgUACGGCGCGgccuGGGg -3'
miRNA:   3'- -GAUGUGga--GCUgGUGCCGCGCgu--UCC- -5'
26450 3' -56.4 NC_005357.1 + 32931 0.67 0.543682
Target:  5'- gCUGCugUUCGGCCAgGGCGaC-CAcGGc -3'
miRNA:   3'- -GAUGugGAGCUGGUgCCGC-GcGUuCC- -5'
26450 3' -56.4 NC_005357.1 + 32626 0.66 0.609085
Target:  5'- -cGCugCUUGACUgguuCGGCGUGCGc-- -3'
miRNA:   3'- gaUGugGAGCUGGu---GCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 31499 0.69 0.412121
Target:  5'- -cAUACCUUG-CCGcCGGCGUGCugcuGGGc -3'
miRNA:   3'- gaUGUGGAGCuGGU-GCCGCGCGu---UCC- -5'
26450 3' -56.4 NC_005357.1 + 30609 0.67 0.566374
Target:  5'- -gGCAUCggcgaucuguucuugCGACCAgcCGGCGCGaauGAGGg -3'
miRNA:   3'- gaUGUGGa--------------GCUGGU--GCCGCGCg--UUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.