miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 1222 0.67 0.481673
Target:  5'- cUCAuGGCCGAUGAGgCGGUCGaaaGCg -3'
miRNA:   3'- -AGUuCCGGCUGUUCaGCCGGCag-CGg -5'
26451 3' -57.1 NC_005357.1 + 12118 0.67 0.491898
Target:  5'- uUCAA--UCGGCAGGUUGGCgCGacgCGCCa -3'
miRNA:   3'- -AGUUccGGCUGUUCAGCCG-GCa--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 3867 0.67 0.491898
Target:  5'- cCAGGcGCCGuCGcuguAGgccgCGcuGCCGUCGCCg -3'
miRNA:   3'- aGUUC-CGGCuGU----UCa---GC--CGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 22773 0.67 0.51264
Target:  5'- -gAGGGCCGAUuGGUCaacgcccugcgGGCCGgucagcauggUGCCg -3'
miRNA:   3'- agUUCCGGCUGuUCAG-----------CCGGCa---------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 11157 0.67 0.501185
Target:  5'- --uGGGCCGccugcGCAcguugcgugcgcuGGUCGGCCGUgGUg -3'
miRNA:   3'- aguUCCGGC-----UGU-------------UCAGCCGGCAgCGg -5'
26451 3' -57.1 NC_005357.1 + 18905 0.67 0.502222
Target:  5'- gUCAucAGGUCGAUgAGGUCGGCgccCG-CGCUg -3'
miRNA:   3'- -AGU--UCCGGCUG-UUCAGCCG---GCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 20730 0.67 0.502222
Target:  5'- aUC-AGGCCGACAug-CuGCUGgCGCCg -3'
miRNA:   3'- -AGuUCCGGCUGUucaGcCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 9098 0.67 0.51264
Target:  5'- gCGAGGCCGuucuuGCcGGUgGGCagguaUCGCCa -3'
miRNA:   3'- aGUUCCGGC-----UGuUCAgCCGgc---AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 25335 0.67 0.523146
Target:  5'- cCAAGGcCCGGcCGAGaacCGcGCCGgcuUCGCCu -3'
miRNA:   3'- aGUUCC-GGCU-GUUCa--GC-CGGC---AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 10315 0.67 0.523146
Target:  5'- gUCGAGGUCGGCAg--CGGCCagggCGUUg -3'
miRNA:   3'- -AGUUCCGGCUGUucaGCCGGca--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 17694 0.67 0.51264
Target:  5'- gUCGAGGCCGcGCAGGcgCGGUgGaaGCg -3'
miRNA:   3'- -AGUUCCGGC-UGUUCa-GCCGgCagCGg -5'
26451 3' -57.1 NC_005357.1 + 36838 0.67 0.511594
Target:  5'- aCGAGGCgGACAucgacacGGUggCGGCCagcguuggCGCCg -3'
miRNA:   3'- aGUUCCGgCUGU-------UCA--GCCGGca------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 33793 0.67 0.490871
Target:  5'- -gAAGGCCGGCGaccucgccaccgcAG-CGGCCGagaagCGCa -3'
miRNA:   3'- agUUCCGGCUGU-------------UCaGCCGGCa----GCGg -5'
26451 3' -57.1 NC_005357.1 + 30030 0.67 0.481673
Target:  5'- aUCAAGGCCGcauACAAGcgcgcaGGCaucgacUCGCCg -3'
miRNA:   3'- -AGUUCCGGC---UGUUCag----CCGgc----AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 36024 0.67 0.481673
Target:  5'- aCAuGGGCCGcgacuACAccgGGcCGGCCGgccugCGCCu -3'
miRNA:   3'- aGU-UCCGGC-----UGU---UCaGCCGGCa----GCGG- -5'
26451 3' -57.1 NC_005357.1 + 14569 0.67 0.468536
Target:  5'- gCGAGcGCgGACAcguucuugagcagcGGcgCGGCCGgCGCCa -3'
miRNA:   3'- aGUUC-CGgCUGU--------------UCa-GCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4557 0.67 0.523146
Target:  5'- cUUGAGGCCGA--AGUCG-CCGaggCGCUg -3'
miRNA:   3'- -AGUUCCGGCUguUCAGCcGGCa--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 8814 0.67 0.489845
Target:  5'- gUCGAGGCgGuACuugguGUCGGCCuugauaccguccUCGCCg -3'
miRNA:   3'- -AGUUCCGgC-UGuu---CAGCCGGc-----------AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 17842 0.67 0.468536
Target:  5'- gCAAGGacacgccggacggcCCGACcguGGcCGGCC-UCGCCa -3'
miRNA:   3'- aGUUCC--------------GGCUGu--UCaGCCGGcAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 1033 0.67 0.523146
Target:  5'- -gAAGGCCacGGCcGG-CGGCagcauGUCGCCg -3'
miRNA:   3'- agUUCCGG--CUGuUCaGCCGg----CAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.