miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 33793 0.67 0.490871
Target:  5'- -gAAGGCCGGCGaccucgccaccgcAG-CGGCCGagaagCGCa -3'
miRNA:   3'- agUUCCGGCUGU-------------UCaGCCGGCa----GCGg -5'
26451 3' -57.1 NC_005357.1 + 24163 0.68 0.432198
Target:  5'- ---cGGCCGGCAAGuucUCGGCgcagGUCGUg -3'
miRNA:   3'- aguuCCGGCUGUUC---AGCCGg---CAGCGg -5'
26451 3' -57.1 NC_005357.1 + 34478 0.68 0.450657
Target:  5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3'
miRNA:   3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 40003 0.68 0.422662
Target:  5'- uUCGAGGCCGGCcuG-CuGCCGUacaccuacgcuUGCCg -3'
miRNA:   3'- -AGUUCCGGCUGuuCaGcCGGCA-----------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 2381 0.68 0.432198
Target:  5'- uUCGAGGCgcaCGGCA---UGGCgGUCGCUg -3'
miRNA:   3'- -AGUUCCG---GCUGUucaGCCGgCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 37505 0.68 0.461539
Target:  5'- cCGAGGgCaAgAAGcUGGUCGUCGCCg -3'
miRNA:   3'- aGUUCCgGcUgUUCaGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4644 0.68 0.450657
Target:  5'- gCAGGGUCGGCAAgaucggacagguuGUUGGCgGgcaccagcgCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUU-------------CAGCCGgCa--------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 41707 0.68 0.441859
Target:  5'- cCAGGcGCuCGAC---UUGGCCGUgGCCg -3'
miRNA:   3'- aGUUC-CG-GCUGuucAGCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 14922 0.68 0.461539
Target:  5'- ----cGCCGAgAAGcuggCGGCCGagGCCg -3'
miRNA:   3'- aguucCGGCUgUUCa---GCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 6661 0.68 0.461539
Target:  5'- cCGGGgaaGCCGuCGuAGUUGGCCuugagGUCGCCa -3'
miRNA:   3'- aGUUC---CGGCuGU-UCAGCCGG-----CAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28117 0.68 0.440887
Target:  5'- cCAAGGCgCGcgccaguucagcaACGAcGUgGGCCGcaUCGCCg -3'
miRNA:   3'- aGUUCCG-GC-------------UGUU-CAgCCGGC--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 19196 0.68 0.461539
Target:  5'- gCGAGGCgCGGucGGU-GGCCGagGCCg -3'
miRNA:   3'- aGUUCCG-GCUguUCAgCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 12302 0.68 0.441859
Target:  5'- --cAGGCCGGCGgcguguucuGGcgCGGCCucaUCGCCu -3'
miRNA:   3'- aguUCCGGCUGU---------UCa-GCCGGc--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 330 0.69 0.413254
Target:  5'- gUC-AGGCUGGCGGuggcGUCgcgcagcaGGCCGUcCGCCa -3'
miRNA:   3'- -AGuUCCGGCUGUU----CAG--------CCGGCA-GCGG- -5'
26451 3' -57.1 NC_005357.1 + 14102 0.69 0.403975
Target:  5'- cCAAGGCCauCGAGUCcgacGCCGagcgCGCCg -3'
miRNA:   3'- aGUUCCGGcuGUUCAGc---CGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 11407 0.69 0.394829
Target:  5'- cCAGGGUcuugagcagCGGCGAGcCGGCgugcagGUCGCCg -3'
miRNA:   3'- aGUUCCG---------GCUGUUCaGCCGg-----CAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 1602 0.69 0.376945
Target:  5'- aCGGGGUCGA-GGGUCGGCCcuUCGUa -3'
miRNA:   3'- aGUUCCGGCUgUUCAGCCGGc-AGCGg -5'
26451 3' -57.1 NC_005357.1 + 34200 0.69 0.36821
Target:  5'- ----cGCCGACGAGggcaCGGCCG-CGCa -3'
miRNA:   3'- aguucCGGCUGUUCa---GCCGGCaGCGg -5'
26451 3' -57.1 NC_005357.1 + 4188 0.69 0.403975
Target:  5'- cUCGAuGGCgGGCAuGUUGGCCGcgagcacgUCGCg -3'
miRNA:   3'- -AGUU-CCGgCUGUuCAGCCGGC--------AGCGg -5'
26451 3' -57.1 NC_005357.1 + 20194 0.69 0.36821
Target:  5'- aUCGcGGCCGACAAccagGGCCG-CGUCa -3'
miRNA:   3'- -AGUuCCGGCUGUUcag-CCGGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.