Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 14102 | 0.69 | 0.403975 |
Target: 5'- cCAAGGCCauCGAGUCcgacGCCGagcgCGCCg -3' miRNA: 3'- aGUUCCGGcuGUUCAGc---CGGCa---GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 11407 | 0.69 | 0.394829 |
Target: 5'- cCAGGGUcuugagcagCGGCGAGcCGGCgugcagGUCGCCg -3' miRNA: 3'- aGUUCCG---------GCUGUUCaGCCGg-----CAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 1602 | 0.69 | 0.376945 |
Target: 5'- aCGGGGUCGA-GGGUCGGCCcuUCGUa -3' miRNA: 3'- aGUUCCGGCUgUUCAGCCGGc-AGCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 34200 | 0.69 | 0.36821 |
Target: 5'- ----cGCCGACGAGggcaCGGCCG-CGCa -3' miRNA: 3'- aguucCGGCUGUUCa---GCCGGCaGCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 23944 | 0.69 | 0.36821 |
Target: 5'- gUCAGGcGCCGcccgGCgAGGUCGGCauUUGCCg -3' miRNA: 3'- -AGUUC-CGGC----UG-UUCAGCCGgcAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 9321 | 0.7 | 0.342848 |
Target: 5'- uUCAGGGCCuuggguucaugGGCGAGgauguaGGCCGcCGCg -3' miRNA: 3'- -AGUUCCGG-----------CUGUUCag----CCGGCaGCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 28019 | 0.7 | 0.359614 |
Target: 5'- -gAAGaaGCCGAuCAuGUCGG-CGUCGCCg -3' miRNA: 3'- agUUC--CGGCU-GUuCAGCCgGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 12012 | 0.7 | 0.359614 |
Target: 5'- ---cGGCCaGCAGcgCGGCCGUgGCCg -3' miRNA: 3'- aguuCCGGcUGUUcaGCCGGCAgCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 31707 | 0.7 | 0.35116 |
Target: 5'- gCAAGGCgaCGACGcauucaAGcaaUCGGCCGagGCCg -3' miRNA: 3'- aGUUCCG--GCUGU------UC---AGCCGGCagCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 41084 | 0.7 | 0.350323 |
Target: 5'- gCAAGGCCGccgaccACGGcuuccucgcgcuuGUCggccugguGGCCGUCGCCc -3' miRNA: 3'- aGUUCCGGC------UGUU-------------CAG--------CCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 22208 | 0.7 | 0.342848 |
Target: 5'- cCAAGGCCaAC-AGcCGGCCGcgggCGCUg -3' miRNA: 3'- aGUUCCGGcUGuUCaGCCGGCa---GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 3592 | 0.7 | 0.326653 |
Target: 5'- cCGcGGCCGcCAGuGUUGGCCGUguauucggaugCGCCa -3' miRNA: 3'- aGUuCCGGCuGUU-CAGCCGGCA-----------GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 28985 | 0.7 | 0.334679 |
Target: 5'- cCGAGGCCGcCAAGcUGGCgGgccUGCCg -3' miRNA: 3'- aGUUCCGGCuGUUCaGCCGgCa--GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 4090 | 0.7 | 0.334679 |
Target: 5'- aUC-AGGCCGGcCAGGUgGGCgG-CGCUg -3' miRNA: 3'- -AGuUCCGGCU-GUUCAgCCGgCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 10361 | 0.7 | 0.326653 |
Target: 5'- gCGGGGCCGAUGAGcaUGGC-GUCGCa -3' miRNA: 3'- aGUUCCGGCUGUUCa-GCCGgCAGCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 4824 | 0.7 | 0.326653 |
Target: 5'- gUCGGGGCCGGC------GCCGUCGUCg -3' miRNA: 3'- -AGUUCCGGCUGuucagcCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 16592 | 0.7 | 0.357912 |
Target: 5'- aCGAGGCCGACcacgcgaugguGUUGGC-GcCGCCg -3' miRNA: 3'- aGUUCCGGCUGuu---------CAGCCGgCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 23683 | 0.7 | 0.342848 |
Target: 5'- cUCGgucGGGCCgGACAcGUacaGGCCGguagCGCCc -3' miRNA: 3'- -AGU---UCCGG-CUGUuCAg--CCGGCa---GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 13160 | 0.7 | 0.342848 |
Target: 5'- cUCGAuGUCGGCcaguGUCGGCCG-CGCUg -3' miRNA: 3'- -AGUUcCGGCUGuu--CAGCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 20257 | 0.7 | 0.326653 |
Target: 5'- --uGGGUCGGCuguugcugcuGUUGGCCGUCGUUg -3' miRNA: 3'- aguUCCGGCUGuu--------CAGCCGGCAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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