miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 6661 0.68 0.461539
Target:  5'- cCGGGgaaGCCGuCGuAGUUGGCCuugagGUCGCCa -3'
miRNA:   3'- aGUUC---CGGCuGU-UCAGCCGG-----CAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 41707 0.68 0.441859
Target:  5'- cCAGGcGCuCGAC---UUGGCCGUgGCCg -3'
miRNA:   3'- aGUUC-CG-GCUGuucAGCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 4644 0.68 0.450657
Target:  5'- gCAGGGUCGGCAAgaucggacagguuGUUGGCgGgcaccagcgCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUU-------------CAGCCGgCa--------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 37505 0.68 0.461539
Target:  5'- cCGAGGgCaAgAAGcUGGUCGUCGCCg -3'
miRNA:   3'- aGUUCCgGcUgUUCaGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 19196 0.68 0.461539
Target:  5'- gCGAGGCgCGGucGGU-GGCCGagGCCg -3'
miRNA:   3'- aGUUCCG-GCUguUCAgCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 34478 0.68 0.450657
Target:  5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3'
miRNA:   3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 14922 0.68 0.461539
Target:  5'- ----cGCCGAgAAGcuggCGGCCGagGCCg -3'
miRNA:   3'- aguucCGGCUgUUCa---GCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 12302 0.68 0.441859
Target:  5'- --cAGGCCGGCGgcguguucuGGcgCGGCCucaUCGCCu -3'
miRNA:   3'- aguUCCGGCUGU---------UCa-GCCGGc--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 2381 0.68 0.432198
Target:  5'- uUCGAGGCgcaCGGCA---UGGCgGUCGCUg -3'
miRNA:   3'- -AGUUCCG---GCUGUucaGCCGgCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 40003 0.68 0.422662
Target:  5'- uUCGAGGCCGGCcuG-CuGCCGUacaccuacgcuUGCCg -3'
miRNA:   3'- -AGUUCCGGCUGuuCaGcCGGCA-----------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 28117 0.68 0.440887
Target:  5'- cCAAGGCgCGcgccaguucagcaACGAcGUgGGCCGcaUCGCCg -3'
miRNA:   3'- aGUUCCG-GC-------------UGUU-CAgCCGGC--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 24163 0.68 0.432198
Target:  5'- ---cGGCCGGCAAGuucUCGGCgcagGUCGUg -3'
miRNA:   3'- aguuCCGGCUGUUC---AGCCGg---CAGCGg -5'
26451 3' -57.1 NC_005357.1 + 1222 0.67 0.481673
Target:  5'- cUCAuGGCCGAUGAGgCGGUCGaaaGCg -3'
miRNA:   3'- -AGUuCCGGCUGUUCaGCCGGCag-CGg -5'
26451 3' -57.1 NC_005357.1 + 11157 0.67 0.501185
Target:  5'- --uGGGCCGccugcGCAcguugcgugcgcuGGUCGGCCGUgGUg -3'
miRNA:   3'- aguUCCGGC-----UGU-------------UCAGCCGGCAgCGg -5'
26451 3' -57.1 NC_005357.1 + 18905 0.67 0.502222
Target:  5'- gUCAucAGGUCGAUgAGGUCGGCgccCG-CGCUg -3'
miRNA:   3'- -AGU--UCCGGCUG-UUCAGCCG---GCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 20730 0.67 0.502222
Target:  5'- aUC-AGGCCGACAug-CuGCUGgCGCCg -3'
miRNA:   3'- -AGuUCCGGCUGUucaGcCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 22773 0.67 0.51264
Target:  5'- -gAGGGCCGAUuGGUCaacgcccugcgGGCCGgucagcauggUGCCg -3'
miRNA:   3'- agUUCCGGCUGuUCAG-----------CCGGCa---------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 9098 0.67 0.51264
Target:  5'- gCGAGGCCGuucuuGCcGGUgGGCagguaUCGCCa -3'
miRNA:   3'- aGUUCCGGC-----UGuUCAgCCGgc---AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 20222 0.67 0.51264
Target:  5'- cCGcGGCCGGCu-GUUGGCCuugggUGCCu -3'
miRNA:   3'- aGUuCCGGCUGuuCAGCCGGca---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 1033 0.67 0.523146
Target:  5'- -gAAGGCCacGGCcGG-CGGCagcauGUCGCCg -3'
miRNA:   3'- agUUCCGG--CUGuUCaGCCGg----CAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.