miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 31707 0.7 0.35116
Target:  5'- gCAAGGCgaCGACGcauucaAGcaaUCGGCCGagGCCg -3'
miRNA:   3'- aGUUCCG--GCUGU------UC---AGCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 20257 0.7 0.326653
Target:  5'- --uGGGUCGGCuguugcugcuGUUGGCCGUCGUUg -3'
miRNA:   3'- aguUCCGGCUGuu--------CAGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4090 0.7 0.334679
Target:  5'- aUC-AGGCCGGcCAGGUgGGCgG-CGCUg -3'
miRNA:   3'- -AGuUCCGGCU-GUUCAgCCGgCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 9321 0.7 0.342848
Target:  5'- uUCAGGGCCuuggguucaugGGCGAGgauguaGGCCGcCGCg -3'
miRNA:   3'- -AGUUCCGG-----------CUGUUCag----CCGGCaGCGg -5'
26451 3' -57.1 NC_005357.1 + 22208 0.7 0.342848
Target:  5'- cCAAGGCCaAC-AGcCGGCCGcgggCGCUg -3'
miRNA:   3'- aGUUCCGGcUGuUCaGCCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 28985 0.7 0.334679
Target:  5'- cCGAGGCCGcCAAGcUGGCgGgccUGCCg -3'
miRNA:   3'- aGUUCCGGCuGUUCaGCCGgCa--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 4824 0.7 0.326653
Target:  5'- gUCGGGGCCGGC------GCCGUCGUCg -3'
miRNA:   3'- -AGUUCCGGCUGuucagcCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 10361 0.7 0.326653
Target:  5'- gCGGGGCCGAUGAGcaUGGC-GUCGCa -3'
miRNA:   3'- aGUUCCGGCUGUUCa-GCCGgCAGCGg -5'
26451 3' -57.1 NC_005357.1 + 37071 0.69 0.394829
Target:  5'- ----uGUCGAgCAuGUUGGCUGUCGCCa -3'
miRNA:   3'- aguucCGGCU-GUuCAGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 29384 0.69 0.369077
Target:  5'- ---cGGCCGcacuCAAGcaacgcgaugacgaGGCCGUCGCCa -3'
miRNA:   3'- aguuCCGGCu---GUUCag------------CCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 26313 0.69 0.385819
Target:  5'- gUCGGGGCCaccGACGugcAGcCGGUCGUgGUCa -3'
miRNA:   3'- -AGUUCCGG---CUGU---UCaGCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 23944 0.69 0.36821
Target:  5'- gUCAGGcGCCGcccgGCgAGGUCGGCauUUGCCg -3'
miRNA:   3'- -AGUUC-CGGC----UG-UUCAGCCGgcAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 35161 0.69 0.383142
Target:  5'- cCGAGGCCaagcagcaguucaaGACcuGggCGGCCGacaUCGCCg -3'
miRNA:   3'- aGUUCCGG--------------CUGuuCa-GCCGGC---AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 20194 0.69 0.36821
Target:  5'- aUCGcGGCCGACAAccagGGCCG-CGUCa -3'
miRNA:   3'- -AGUuCCGGCUGUUcag-CCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4188 0.69 0.403975
Target:  5'- cUCGAuGGCgGGCAuGUUGGCCGcgagcacgUCGCg -3'
miRNA:   3'- -AGUU-CCGgCUGUuCAGCCGGC--------AGCGg -5'
26451 3' -57.1 NC_005357.1 + 14102 0.69 0.403975
Target:  5'- cCAAGGCCauCGAGUCcgacGCCGagcgCGCCg -3'
miRNA:   3'- aGUUCCGGcuGUUCAGc---CGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 330 0.69 0.413254
Target:  5'- gUC-AGGCUGGCGGuggcGUCgcgcagcaGGCCGUcCGCCa -3'
miRNA:   3'- -AGuUCCGGCUGUU----CAG--------CCGGCA-GCGG- -5'
26451 3' -57.1 NC_005357.1 + 11407 0.69 0.394829
Target:  5'- cCAGGGUcuugagcagCGGCGAGcCGGCgugcagGUCGCCg -3'
miRNA:   3'- aGUUCCG---------GCUGUUCaGCCGg-----CAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 1602 0.69 0.376945
Target:  5'- aCGGGGUCGA-GGGUCGGCCcuUCGUa -3'
miRNA:   3'- aGUUCCGGCUgUUCAGCCGGc-AGCGg -5'
26451 3' -57.1 NC_005357.1 + 34200 0.69 0.36821
Target:  5'- ----cGCCGACGAGggcaCGGCCG-CGCa -3'
miRNA:   3'- aguucCGGCUGUUCa---GCCGGCaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.