miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 14569 0.67 0.468536
Target:  5'- gCGAGcGCgGACAcguucuugagcagcGGcgCGGCCGgCGCCa -3'
miRNA:   3'- aGUUC-CGgCUGU--------------UCa-GCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 14922 0.68 0.461539
Target:  5'- ----cGCCGAgAAGcuggCGGCCGagGCCg -3'
miRNA:   3'- aguucCGGCUgUUCa---GCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 16172 0.66 0.587655
Target:  5'- aCcAGGCCGGCGGGUgccCGuGCCuUCGgCg -3'
miRNA:   3'- aGuUCCGGCUGUUCA---GC-CGGcAGCgG- -5'
26451 3' -57.1 NC_005357.1 + 16592 0.7 0.357912
Target:  5'- aCGAGGCCGACcacgcgaugguGUUGGC-GcCGCCg -3'
miRNA:   3'- aGUUCCGGCUGuu---------CAGCCGgCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 17694 0.67 0.51264
Target:  5'- gUCGAGGCCGcGCAGGcgCGGUgGaaGCg -3'
miRNA:   3'- -AGUUCCGGC-UGUUCa-GCCGgCagCGg -5'
26451 3' -57.1 NC_005357.1 + 17842 0.67 0.468536
Target:  5'- gCAAGGacacgccggacggcCCGACcguGGcCGGCC-UCGCCa -3'
miRNA:   3'- aGUUCC--------------GGCUGu--UCaGCCGGcAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 17994 0.66 0.565919
Target:  5'- cCGAGGCCgcgcgcggcaccGACAAaUCgGGCCGgcugCGCUu -3'
miRNA:   3'- aGUUCCGG------------CUGUUcAG-CCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 18192 0.73 0.223279
Target:  5'- gCGAGGacaucaUCGAgAAGaUCGGCCGcUCGCCg -3'
miRNA:   3'- aGUUCC------GGCUgUUC-AGCCGGC-AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18368 0.66 0.544396
Target:  5'- ----uGCCGGCGgcgaGGUUGGCC-UUGCCg -3'
miRNA:   3'- aguucCGGCUGU----UCAGCCGGcAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18463 0.73 0.229207
Target:  5'- gUCGcGGcGCCGGCGGcGUCGGCCGauUCGUCc -3'
miRNA:   3'- -AGU-UC-CGGCUGUU-CAGCCGGC--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18876 0.77 0.126234
Target:  5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3'
miRNA:   3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 18905 0.67 0.502222
Target:  5'- gUCAucAGGUCGAUgAGGUCGGCgccCG-CGCUg -3'
miRNA:   3'- -AGU--UCCGGCUG-UUCAGCCG---GCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 19196 0.68 0.461539
Target:  5'- gCGAGGCgCGGucGGU-GGCCGagGCCg -3'
miRNA:   3'- aGUUCCG-GCUguUCAgCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 19238 0.73 0.229207
Target:  5'- aCGAGGCCGACcuG-CuGCUGUCGCa -3'
miRNA:   3'- aGUUCCGGCUGuuCaGcCGGCAGCGg -5'
26451 3' -57.1 NC_005357.1 + 20194 0.69 0.36821
Target:  5'- aUCGcGGCCGACAAccagGGCCG-CGUCa -3'
miRNA:   3'- -AGUuCCGGCUGUUcag-CCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 20222 0.67 0.51264
Target:  5'- cCGcGGCCGGCu-GUUGGCCuugggUGCCu -3'
miRNA:   3'- aGUuCCGGCUGuuCAGCCGGca---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 20257 0.7 0.326653
Target:  5'- --uGGGUCGGCuguugcugcuGUUGGCCGUCGUUg -3'
miRNA:   3'- aguUCCGGCUGuu--------CAGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 20730 0.67 0.502222
Target:  5'- aUC-AGGCCGACAug-CuGCUGgCGCCg -3'
miRNA:   3'- -AGuUCCGGCUGUucaGcCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 21458 0.67 0.471552
Target:  5'- gCGGGGgCGGCAGgauGUUGGCC-UCGaCCa -3'
miRNA:   3'- aGUUCCgGCUGUU---CAGCCGGcAGC-GG- -5'
26451 3' -57.1 NC_005357.1 + 21537 0.66 0.576764
Target:  5'- aCGuuGCCGGC-AGUCGGuuCCGUgGUCg -3'
miRNA:   3'- aGUucCGGCUGuUCAGCC--GGCAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.