miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 25302 0.66 0.565919
Target:  5'- gUCGugcGGCCGGCccugccacCGGCgcuCGUCGCCg -3'
miRNA:   3'- -AGUu--CCGGCUGuuca----GCCG---GCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 25005 0.66 0.565919
Target:  5'- -gGGGGCCGACGAcagCGG--GUUGCCg -3'
miRNA:   3'- agUUCCGGCUGUUca-GCCggCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 24572 0.78 0.092583
Target:  5'- gCGAGGCCGGCcacGGUCgGGCCGUCcggcguguccuuGCCg -3'
miRNA:   3'- aGUUCCGGCUGu--UCAG-CCGGCAG------------CGG- -5'
26451 3' -57.1 NC_005357.1 + 24301 0.67 0.471552
Target:  5'- -gGGGGCgGugAGGUCGGCgagcaGCCg -3'
miRNA:   3'- agUUCCGgCugUUCAGCCGgcag-CGG- -5'
26451 3' -57.1 NC_005357.1 + 24163 0.68 0.432198
Target:  5'- ---cGGCCGGCAAGuucUCGGCgcagGUCGUg -3'
miRNA:   3'- aguuCCGGCUGUUC---AGCCGg---CAGCGg -5'
26451 3' -57.1 NC_005357.1 + 23947 0.74 0.19557
Target:  5'- gUCAuccGGUgGACGAaUCGGCCGaCGCCg -3'
miRNA:   3'- -AGUu--CCGgCUGUUcAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23944 0.69 0.36821
Target:  5'- gUCAGGcGCCGcccgGCgAGGUCGGCauUUGCCg -3'
miRNA:   3'- -AGUUC-CGGC----UG-UUCAGCCGgcAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23683 0.7 0.342848
Target:  5'- cUCGgucGGGCCgGACAcGUacaGGCCGguagCGCCc -3'
miRNA:   3'- -AGU---UCCGG-CUGUuCAg--CCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 23544 0.67 0.471552
Target:  5'- aCGcGGUCGAUGgccUCGGCCGacaUCGCCg -3'
miRNA:   3'- aGUuCCGGCUGUuc-AGCCGGC---AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23178 0.66 0.544396
Target:  5'- aUCGAcGCCGAgAAGUUcaugGGCCuGaCGCCg -3'
miRNA:   3'- -AGUUcCGGCUgUUCAG----CCGG-CaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 22773 0.67 0.51264
Target:  5'- -gAGGGCCGAUuGGUCaacgcccugcgGGCCGgucagcauggUGCCg -3'
miRNA:   3'- agUUCCGGCUGuUCAG-----------CCGGCa---------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 22495 0.66 0.565919
Target:  5'- cCAcGGCCGACAAGgaguUCGGCgG-CGaCa -3'
miRNA:   3'- aGUuCCGGCUGUUC----AGCCGgCaGCgG- -5'
26451 3' -57.1 NC_005357.1 + 22208 0.7 0.342848
Target:  5'- cCAAGGCCaAC-AGcCGGCCGcgggCGCUg -3'
miRNA:   3'- aGUUCCGGcUGuUCaGCCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 21537 0.66 0.576764
Target:  5'- aCGuuGCCGGC-AGUCGGuuCCGUgGUCg -3'
miRNA:   3'- aGUucCGGCUGuUCAGCC--GGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 21458 0.67 0.471552
Target:  5'- gCGGGGgCGGCAGgauGUUGGCC-UCGaCCa -3'
miRNA:   3'- aGUUCCgGCUGUU---CAGCCGGcAGC-GG- -5'
26451 3' -57.1 NC_005357.1 + 20730 0.67 0.502222
Target:  5'- aUC-AGGCCGACAug-CuGCUGgCGCCg -3'
miRNA:   3'- -AGuUCCGGCUGUucaGcCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 20257 0.7 0.326653
Target:  5'- --uGGGUCGGCuguugcugcuGUUGGCCGUCGUUg -3'
miRNA:   3'- aguUCCGGCUGuu--------CAGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 20222 0.67 0.51264
Target:  5'- cCGcGGCCGGCu-GUUGGCCuugggUGCCu -3'
miRNA:   3'- aGUuCCGGCUGuuCAGCCGGca---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 20194 0.69 0.36821
Target:  5'- aUCGcGGCCGACAAccagGGCCG-CGUCa -3'
miRNA:   3'- -AGUuCCGGCUGUUcag-CCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 19238 0.73 0.229207
Target:  5'- aCGAGGCCGACcuG-CuGCUGUCGCa -3'
miRNA:   3'- aGUUCCGGCUGuuCaGcCGGCAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.