miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 33793 0.67 0.490871
Target:  5'- -gAAGGCCGGCGaccucgccaccgcAG-CGGCCGagaagCGCa -3'
miRNA:   3'- agUUCCGGCUGU-------------UCaGCCGGCa----GCGg -5'
26451 3' -57.1 NC_005357.1 + 33610 0.66 0.565919
Target:  5'- aUCAAGGCCGACAccaAGUaccGCC-UCGaCg -3'
miRNA:   3'- -AGUUCCGGCUGU---UCAgc-CGGcAGCgG- -5'
26451 3' -57.1 NC_005357.1 + 32557 0.66 0.565919
Target:  5'- ---uGGCCGAgAAGcagCGcGCCGgUGCCa -3'
miRNA:   3'- aguuCCGGCUgUUCa--GC-CGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 32323 0.73 0.214066
Target:  5'- aUCAAGGCCGGCgucccgacaaccgccGcccaGGUCGcuGCgGUCGCCg -3'
miRNA:   3'- -AGUUCCGGCUG---------------U----UCAGC--CGgCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 31707 0.7 0.35116
Target:  5'- gCAAGGCgaCGACGcauucaAGcaaUCGGCCGagGCCg -3'
miRNA:   3'- aGUUCCG--GCUGU------UC---AGCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 31457 0.77 0.121732
Target:  5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3'
miRNA:   3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 30030 0.67 0.481673
Target:  5'- aUCAAGGCCGcauACAAGcgcgcaGGCaucgacUCGCCg -3'
miRNA:   3'- -AGUUCCGGC---UGUUCag----CCGgc----AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 29876 0.71 0.295985
Target:  5'- gCGAGGCCGGCAAGaaauUCa-CCGaCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUUC----AGccGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 29566 0.78 0.092583
Target:  5'- cUCGGGGUaucgCGuCAGGUCGGCCG-CGCCc -3'
miRNA:   3'- -AGUUCCG----GCuGUUCAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 29384 0.69 0.369077
Target:  5'- ---cGGCCGcacuCAAGcaacgcgaugacgaGGCCGUCGCCa -3'
miRNA:   3'- aguuCCGGCu---GUUCag------------CCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28985 0.7 0.334679
Target:  5'- cCGAGGCCGcCAAGcUGGCgGgccUGCCg -3'
miRNA:   3'- aGUUCCGGCuGUUCaGCCGgCa--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 28894 0.66 0.587655
Target:  5'- gUCAGgcGGCCGACAGuUCGGCgCGgacggcaaacCGCUu -3'
miRNA:   3'- -AGUU--CCGGCUGUUcAGCCG-GCa---------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 28883 0.75 0.157487
Target:  5'- cUCGcuGCUGGCGuAGUugcUGGCCGUCGCCg -3'
miRNA:   3'- -AGUucCGGCUGU-UCA---GCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28448 0.71 0.281511
Target:  5'- gUCGAuuuCCGGCAcGUacaugaGGCCGUCGCCg -3'
miRNA:   3'- -AGUUcc-GGCUGUuCAg-----CCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28117 0.68 0.440887
Target:  5'- cCAAGGCgCGcgccaguucagcaACGAcGUgGGCCGcaUCGCCg -3'
miRNA:   3'- aGUUCCG-GC-------------UGUU-CAgCCGGC--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28019 0.7 0.359614
Target:  5'- -gAAGaaGCCGAuCAuGUCGG-CGUCGCCg -3'
miRNA:   3'- agUUC--CGGCU-GUuCAGCCgGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 26897 0.66 0.576764
Target:  5'- -gGAGGCCGGCAccgugcauaUCGGCC--UGCCc -3'
miRNA:   3'- agUUCCGGCUGUuc-------AGCCGGcaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 26313 0.69 0.385819
Target:  5'- gUCGGGGCCaccGACGugcAGcCGGUCGUgGUCa -3'
miRNA:   3'- -AGUUCCGG---CUGU---UCaGCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 25504 0.67 0.491898
Target:  5'- gUCAGGGUCaGGCccgcgaugAGGUCGguuuuGCCGcCGCCg -3'
miRNA:   3'- -AGUUCCGG-CUG--------UUCAGC-----CGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 25335 0.67 0.523146
Target:  5'- cCAAGGcCCGGcCGAGaacCGcGCCGgcuUCGCCu -3'
miRNA:   3'- aGUUCC-GGCU-GUUCa--GC-CGGC---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.