miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 41707 0.68 0.441859
Target:  5'- cCAGGcGCuCGAC---UUGGCCGUgGCCg -3'
miRNA:   3'- aGUUC-CG-GCUGuucAGCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 41694 0.71 0.274486
Target:  5'- aCcuGGCCGGCGuuGUCGGCaaaGcCGCCc -3'
miRNA:   3'- aGuuCCGGCUGUu-CAGCCGg--CaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 41606 0.75 0.165876
Target:  5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3'
miRNA:   3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 41084 0.7 0.350323
Target:  5'- gCAAGGCCGccgaccACGGcuuccucgcgcuuGUCggccugguGGCCGUCGCCc -3'
miRNA:   3'- aGUUCCGGC------UGUU-------------CAG--------CCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 40003 0.68 0.422662
Target:  5'- uUCGAGGCCGGCcuG-CuGCCGUacaccuacgcuUGCCg -3'
miRNA:   3'- -AGUUCCGGCUGuuCaGcCGGCA-----------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 39665 0.71 0.295985
Target:  5'- gUCGAGGUguCGGCAguGGUCGGCaCGcccgagcagCGCCg -3'
miRNA:   3'- -AGUUCCG--GCUGU--UCAGCCG-GCa--------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 38044 1.12 0.000323
Target:  5'- aUCAAGGCCGACAAGUCGGCCGUCGCCu -3'
miRNA:   3'- -AGUUCCGGCUGUUCAGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 37536 0.73 0.235267
Target:  5'- cCGuGGCCGAaaaCGAGgccGCCGUCGCCg -3'
miRNA:   3'- aGUuCCGGCU---GUUCagcCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 37505 0.68 0.461539
Target:  5'- cCGAGGgCaAgAAGcUGGUCGUCGCCg -3'
miRNA:   3'- aGUUCCgGcUgUUCaGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 37071 0.69 0.394829
Target:  5'- ----uGUCGAgCAuGUUGGCUGUCGCCa -3'
miRNA:   3'- aguucCGGCU-GUuCAGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 36838 0.67 0.511594
Target:  5'- aCGAGGCgGACAucgacacGGUggCGGCCagcguuggCGCCg -3'
miRNA:   3'- aGUUCCGgCUGU-------UCA--GCCGGca------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 36067 0.66 0.587655
Target:  5'- ----uGCCGAC--GUgGGCCGguUCGCCa -3'
miRNA:   3'- aguucCGGCUGuuCAgCCGGC--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 36024 0.67 0.481673
Target:  5'- aCAuGGGCCGcgacuACAccgGGcCGGCCGgccugCGCCu -3'
miRNA:   3'- aGU-UCCGGC-----UGU---UCaGCCGGCa----GCGG- -5'
26451 3' -57.1 NC_005357.1 + 35582 0.76 0.137218
Target:  5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3'
miRNA:   3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 35176 0.8 0.073651
Target:  5'- aCAAGGCCGGCGAcaUCGGCCcG-CGCCa -3'
miRNA:   3'- aGUUCCGGCUGUUc-AGCCGG-CaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 35161 0.69 0.383142
Target:  5'- cCGAGGCCaagcagcaguucaaGACcuGggCGGCCGacaUCGCCg -3'
miRNA:   3'- aGUUCCGG--------------CUGuuCa-GCCGGC---AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 34787 0.74 0.190402
Target:  5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3'
miRNA:   3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 34478 0.68 0.450657
Target:  5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3'
miRNA:   3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 34200 0.69 0.36821
Target:  5'- ----cGCCGACGAGggcaCGGCCG-CGCa -3'
miRNA:   3'- aguucCGGCUGUUCa---GCCGGCaGCGg -5'
26451 3' -57.1 NC_005357.1 + 34006 0.73 0.211815
Target:  5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3'
miRNA:   3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.