miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 12012 0.7 0.359614
Target:  5'- ---cGGCCaGCAGcgCGGCCGUgGCCg -3'
miRNA:   3'- aguuCCGGcUGUUcaGCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 39665 0.71 0.295985
Target:  5'- gUCGAGGUguCGGCAguGGUCGGCaCGcccgagcagCGCCg -3'
miRNA:   3'- -AGUUCCG--GCUGU--UCAGCCG-GCa--------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 1324 0.71 0.303437
Target:  5'- cCAccAGGCCGACAAGcgCGaggaaGCCGUgGUCg -3'
miRNA:   3'- aGU--UCCGGCUGUUCa-GC-----CGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 4383 0.71 0.303437
Target:  5'- gCGAcGGCCGACuuGUCGGCCuugaugaaaGCCg -3'
miRNA:   3'- aGUU-CCGGCUGuuCAGCCGGcag------CGG- -5'
26451 3' -57.1 NC_005357.1 + 20257 0.7 0.326653
Target:  5'- --uGGGUCGGCuguugcugcuGUUGGCCGUCGUUg -3'
miRNA:   3'- aguUCCGGCUGuu--------CAGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 3592 0.7 0.326653
Target:  5'- cCGcGGCCGcCAGuGUUGGCCGUguauucggaugCGCCa -3'
miRNA:   3'- aGUuCCGGCuGUU-CAGCCGGCA-----------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 13160 0.7 0.342848
Target:  5'- cUCGAuGUCGGCcaguGUCGGCCG-CGCUg -3'
miRNA:   3'- -AGUUcCGGCUGuu--CAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23683 0.7 0.342848
Target:  5'- cUCGgucGGGCCgGACAcGUacaGGCCGguagCGCCc -3'
miRNA:   3'- -AGU---UCCGG-CUGUuCAg--CCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 16592 0.7 0.357912
Target:  5'- aCGAGGCCGACcacgcgaugguGUUGGC-GcCGCCg -3'
miRNA:   3'- aGUUCCGGCUGuu---------CAGCCGgCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28448 0.71 0.281511
Target:  5'- gUCGAuuuCCGGCAcGUacaugaGGCCGUCGCCg -3'
miRNA:   3'- -AGUUcc-GGCUGUuCAg-----CCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 8850 0.72 0.26086
Target:  5'- --cGGGCCaGCGcGUUGGCCucgGUCGCCa -3'
miRNA:   3'- aguUCCGGcUGUuCAGCCGG---CAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18463 0.73 0.229207
Target:  5'- gUCGcGGcGCCGGCGGcGUCGGCCGauUCGUCc -3'
miRNA:   3'- -AGU-UC-CGGCUGUU-CAGCCGGC--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 24572 0.78 0.092583
Target:  5'- gCGAGGCCGGCcacGGUCgGGCCGUCcggcguguccuuGCCg -3'
miRNA:   3'- aGUUCCGGCUGu--UCAG-CCGGCAG------------CGG- -5'
26451 3' -57.1 NC_005357.1 + 29566 0.78 0.092583
Target:  5'- cUCGGGGUaucgCGuCAGGUCGGCCG-CGCCc -3'
miRNA:   3'- -AGUUCCG----GCuGUUCAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 8784 0.77 0.126234
Target:  5'- aCGcGGCgcaCGAUggGUCGGCCG-CGCCg -3'
miRNA:   3'- aGUuCCG---GCUGuuCAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28883 0.75 0.157487
Target:  5'- cUCGcuGCUGGCGuAGUugcUGGCCGUCGCCg -3'
miRNA:   3'- -AGUucCGGCUGU-UCA---GCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 13308 0.75 0.169526
Target:  5'- cCGGGGCCGGCGuuguaggcggcguaGGcuuUCGGCagGUCGCCg -3'
miRNA:   3'- aGUUCCGGCUGU--------------UC---AGCCGg-CAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 601 0.74 0.180425
Target:  5'- ---uGGCCGccuGCGGGUCGGCCagcagCGCCg -3'
miRNA:   3'- aguuCCGGC---UGUUCAGCCGGca---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 2593 0.74 0.190402
Target:  5'- gCAAGGCCaGCAGGUUGGCgagGUCGUa -3'
miRNA:   3'- aGUUCCGGcUGUUCAGCCGg--CAGCGg -5'
26451 3' -57.1 NC_005357.1 + 32323 0.73 0.214066
Target:  5'- aUCAAGGCCGGCgucccgacaaccgccGcccaGGUCGcuGCgGUCGCCg -3'
miRNA:   3'- -AGUUCCGGCUG---------------U----UCAGC--CGgCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.