miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 330 0.69 0.413254
Target:  5'- gUC-AGGCUGGCGGuggcGUCgcgcagcaGGCCGUcCGCCa -3'
miRNA:   3'- -AGuUCCGGCUGUU----CAG--------CCGGCA-GCGG- -5'
26451 3' -57.1 NC_005357.1 + 601 0.74 0.180425
Target:  5'- ---uGGCCGccuGCGGGUCGGCCagcagCGCCg -3'
miRNA:   3'- aguuCCGGC---UGUUCAGCCGGca---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 1033 0.67 0.523146
Target:  5'- -gAAGGCCacGGCcGG-CGGCagcauGUCGCCg -3'
miRNA:   3'- agUUCCGG--CUGuUCaGCCGg----CAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 1222 0.67 0.481673
Target:  5'- cUCAuGGCCGAUGAGgCGGUCGaaaGCg -3'
miRNA:   3'- -AGUuCCGGCUGUUCaGCCGGCag-CGg -5'
26451 3' -57.1 NC_005357.1 + 1324 0.71 0.303437
Target:  5'- cCAccAGGCCGACAAGcgCGaggaaGCCGUgGUCg -3'
miRNA:   3'- aGU--UCCGGCUGUUCa-GC-----CGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 1602 0.69 0.376945
Target:  5'- aCGGGGUCGA-GGGUCGGCCcuUCGUa -3'
miRNA:   3'- aGUUCCGGCUgUUCAGCCGGc-AGCGg -5'
26451 3' -57.1 NC_005357.1 + 2381 0.68 0.432198
Target:  5'- uUCGAGGCgcaCGGCA---UGGCgGUCGCUg -3'
miRNA:   3'- -AGUUCCG---GCUGUucaGCCGgCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 2593 0.74 0.190402
Target:  5'- gCAAGGCCaGCAGGUUGGCgagGUCGUa -3'
miRNA:   3'- aGUUCCGGcUGUUCAGCCGg--CAGCGg -5'
26451 3' -57.1 NC_005357.1 + 3007 0.66 0.565919
Target:  5'- -gAAGGCgCGGCGGGUCauaGCUGcUCGUCc -3'
miRNA:   3'- agUUCCG-GCUGUUCAGc--CGGC-AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 3592 0.7 0.326653
Target:  5'- cCGcGGCCGcCAGuGUUGGCCGUguauucggaugCGCCa -3'
miRNA:   3'- aGUuCCGGCuGUU-CAGCCGGCA-----------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 3867 0.67 0.491898
Target:  5'- cCAGGcGCCGuCGcuguAGgccgCGcuGCCGUCGCCg -3'
miRNA:   3'- aGUUC-CGGCuGU----UCa---GC--CGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4090 0.7 0.334679
Target:  5'- aUC-AGGCCGGcCAGGUgGGCgG-CGCUg -3'
miRNA:   3'- -AGuUCCGGCU-GUUCAgCCGgCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4188 0.69 0.403975
Target:  5'- cUCGAuGGCgGGCAuGUUGGCCGcgagcacgUCGCg -3'
miRNA:   3'- -AGUU-CCGgCUGUuCAGCCGGC--------AGCGg -5'
26451 3' -57.1 NC_005357.1 + 4269 0.66 0.587655
Target:  5'- gUCAGcGCCGGCAuGGUgaUGGCCGU-GUCg -3'
miRNA:   3'- -AGUUcCGGCUGU-UCA--GCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 4383 0.71 0.303437
Target:  5'- gCGAcGGCCGACuuGUCGGCCuugaugaaaGCCg -3'
miRNA:   3'- aGUU-CCGGCUGuuCAGCCGGcag------CGG- -5'
26451 3' -57.1 NC_005357.1 + 4557 0.67 0.523146
Target:  5'- cUUGAGGCCGA--AGUCG-CCGaggCGCUg -3'
miRNA:   3'- -AGUUCCGGCUguUCAGCcGGCa--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 4644 0.68 0.450657
Target:  5'- gCAGGGUCGGCAAgaucggacagguuGUUGGCgGgcaccagcgCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUU-------------CAGCCGgCa--------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 4824 0.7 0.326653
Target:  5'- gUCGGGGCCGGC------GCCGUCGUCg -3'
miRNA:   3'- -AGUUCCGGCUGuucagcCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 5095 0.66 0.533733
Target:  5'- aCAGgcGGCCGGCccagcguccGGUgCGGCUGgCGCCg -3'
miRNA:   3'- aGUU--CCGGCUGu--------UCA-GCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 5140 0.76 0.133462
Target:  5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3'
miRNA:   3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.