miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 38044 1.12 0.000323
Target:  5'- aUCAAGGCCGACAAGUCGGCCGUCGCCu -3'
miRNA:   3'- -AGUUCCGGCUGUUCAGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 35176 0.8 0.073651
Target:  5'- aCAAGGCCGGCGAcaUCGGCCcG-CGCCa -3'
miRNA:   3'- aGUUCCGGCUGUUc-AGCCGG-CaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 29566 0.78 0.092583
Target:  5'- cUCGGGGUaucgCGuCAGGUCGGCCG-CGCCc -3'
miRNA:   3'- -AGUUCCG----GCuGUUCAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 24572 0.78 0.092583
Target:  5'- gCGAGGCCGGCcacGGUCgGGCCGUCcggcguguccuuGCCg -3'
miRNA:   3'- aGUUCCGGCUGu--UCAG-CCGGCAG------------CGG- -5'
26451 3' -57.1 NC_005357.1 + 6363 0.78 0.101958
Target:  5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3'
miRNA:   3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5'
26451 3' -57.1 NC_005357.1 + 31457 0.77 0.121732
Target:  5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3'
miRNA:   3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18876 0.77 0.126234
Target:  5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3'
miRNA:   3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 8784 0.77 0.126234
Target:  5'- aCGcGGCgcaCGAUggGUCGGCCG-CGCCg -3'
miRNA:   3'- aGUuCCG---GCUGuuCAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 5140 0.76 0.133462
Target:  5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3'
miRNA:   3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 35582 0.76 0.137218
Target:  5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3'
miRNA:   3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28883 0.75 0.157487
Target:  5'- cUCGcuGCUGGCGuAGUugcUGGCCGUCGCCg -3'
miRNA:   3'- -AGUucCGGCUGU-UCA---GCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 41606 0.75 0.165876
Target:  5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3'
miRNA:   3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 13308 0.75 0.169526
Target:  5'- cCGGGGCCGGCGuuguaggcggcguaGGcuuUCGGCagGUCGCCg -3'
miRNA:   3'- aGUUCCGGCUGU--------------UC---AGCCGg-CAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 601 0.74 0.180425
Target:  5'- ---uGGCCGccuGCGGGUCGGCCagcagCGCCg -3'
miRNA:   3'- aguuCCGGC---UGUUCAGCCGGca---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 34787 0.74 0.190402
Target:  5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3'
miRNA:   3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 2593 0.74 0.190402
Target:  5'- gCAAGGCCaGCAGGUUGGCgagGUCGUa -3'
miRNA:   3'- aGUUCCGGcUGUUCAGCCGg--CAGCGg -5'
26451 3' -57.1 NC_005357.1 + 23947 0.74 0.19557
Target:  5'- gUCAuccGGUgGACGAaUCGGCCGaCGCCg -3'
miRNA:   3'- -AGUu--CCGgCUGUUcAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 13446 0.73 0.211815
Target:  5'- aCGAGGacuaCGACAccuggcugaaAGUCGGCaUGUCGCUg -3'
miRNA:   3'- aGUUCCg---GCUGU----------UCAGCCG-GCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 34006 0.73 0.211815
Target:  5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3'
miRNA:   3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 32323 0.73 0.214066
Target:  5'- aUCAAGGCCGGCgucccgacaaccgccGcccaGGUCGcuGCgGUCGCCg -3'
miRNA:   3'- -AGUUCCGGCUG---------------U----UCAGC--CGgCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.