miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 28019 0.7 0.359614
Target:  5'- -gAAGaaGCCGAuCAuGUCGG-CGUCGCCg -3'
miRNA:   3'- agUUC--CGGCU-GUuCAGCCgGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 12012 0.7 0.359614
Target:  5'- ---cGGCCaGCAGcgCGGCCGUgGCCg -3'
miRNA:   3'- aguuCCGGcUGUUcaGCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 16592 0.7 0.357912
Target:  5'- aCGAGGCCGACcacgcgaugguGUUGGC-GcCGCCg -3'
miRNA:   3'- aGUUCCGGCUGuu---------CAGCCGgCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23683 0.7 0.342848
Target:  5'- cUCGgucGGGCCgGACAcGUacaGGCCGguagCGCCc -3'
miRNA:   3'- -AGU---UCCGG-CUGUuCAg--CCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 13160 0.7 0.342848
Target:  5'- cUCGAuGUCGGCcaguGUCGGCCG-CGCUg -3'
miRNA:   3'- -AGUUcCGGCUGuu--CAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 3592 0.7 0.326653
Target:  5'- cCGcGGCCGcCAGuGUUGGCCGUguauucggaugCGCCa -3'
miRNA:   3'- aGUuCCGGCuGUU-CAGCCGGCA-----------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 20257 0.7 0.326653
Target:  5'- --uGGGUCGGCuguugcugcuGUUGGCCGUCGUUg -3'
miRNA:   3'- aguUCCGGCUGuu--------CAGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4383 0.71 0.303437
Target:  5'- gCGAcGGCCGACuuGUCGGCCuugaugaaaGCCg -3'
miRNA:   3'- aGUU-CCGGCUGuuCAGCCGGcag------CGG- -5'
26451 3' -57.1 NC_005357.1 + 1324 0.71 0.303437
Target:  5'- cCAccAGGCCGACAAGcgCGaggaaGCCGUgGUCg -3'
miRNA:   3'- aGU--UCCGGCUGUUCa-GC-----CGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 34787 0.74 0.190402
Target:  5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3'
miRNA:   3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23947 0.74 0.19557
Target:  5'- gUCAuccGGUgGACGAaUCGGCCGaCGCCg -3'
miRNA:   3'- -AGUu--CCGgCUGUUcAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 13446 0.73 0.211815
Target:  5'- aCGAGGacuaCGACAccuggcugaaAGUCGGCaUGUCGCUg -3'
miRNA:   3'- aGUUCCg---GCUGU----------UCAGCCG-GCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 34006 0.73 0.211815
Target:  5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3'
miRNA:   3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 41606 0.75 0.165876
Target:  5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3'
miRNA:   3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 35582 0.76 0.137218
Target:  5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3'
miRNA:   3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 5140 0.76 0.133462
Target:  5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3'
miRNA:   3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18876 0.77 0.126234
Target:  5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3'
miRNA:   3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 31457 0.77 0.121732
Target:  5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3'
miRNA:   3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 6363 0.78 0.101958
Target:  5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3'
miRNA:   3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5'
26451 3' -57.1 NC_005357.1 + 36067 0.66 0.587655
Target:  5'- ----uGCCGAC--GUgGGCCGguUCGCCa -3'
miRNA:   3'- aguucCGGCUGuuCAgCCGGC--AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.