Results 41 - 60 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 23944 | 0.69 | 0.36821 |
Target: 5'- gUCAGGcGCCGcccgGCgAGGUCGGCauUUGCCg -3' miRNA: 3'- -AGUUC-CGGC----UG-UUCAGCCGgcAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 28019 | 0.7 | 0.359614 |
Target: 5'- -gAAGaaGCCGAuCAuGUCGG-CGUCGCCg -3' miRNA: 3'- agUUC--CGGCU-GUuCAGCCgGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 12012 | 0.7 | 0.359614 |
Target: 5'- ---cGGCCaGCAGcgCGGCCGUgGCCg -3' miRNA: 3'- aguuCCGGcUGUUcaGCCGGCAgCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 16592 | 0.7 | 0.357912 |
Target: 5'- aCGAGGCCGACcacgcgaugguGUUGGC-GcCGCCg -3' miRNA: 3'- aGUUCCGGCUGuu---------CAGCCGgCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 23683 | 0.7 | 0.342848 |
Target: 5'- cUCGgucGGGCCgGACAcGUacaGGCCGguagCGCCc -3' miRNA: 3'- -AGU---UCCGG-CUGUuCAg--CCGGCa---GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 13160 | 0.7 | 0.342848 |
Target: 5'- cUCGAuGUCGGCcaguGUCGGCCG-CGCUg -3' miRNA: 3'- -AGUUcCGGCUGuu--CAGCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 3592 | 0.7 | 0.326653 |
Target: 5'- cCGcGGCCGcCAGuGUUGGCCGUguauucggaugCGCCa -3' miRNA: 3'- aGUuCCGGCuGUU-CAGCCGGCA-----------GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 20257 | 0.7 | 0.326653 |
Target: 5'- --uGGGUCGGCuguugcugcuGUUGGCCGUCGUUg -3' miRNA: 3'- aguUCCGGCUGuu--------CAGCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 4383 | 0.71 | 0.303437 |
Target: 5'- gCGAcGGCCGACuuGUCGGCCuugaugaaaGCCg -3' miRNA: 3'- aGUU-CCGGCUGuuCAGCCGGcag------CGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 36067 | 0.66 | 0.587655 |
Target: 5'- ----uGCCGAC--GUgGGCCGguUCGCCa -3' miRNA: 3'- aguucCGGCUGuuCAgCCGGC--AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 34006 | 0.73 | 0.211815 |
Target: 5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3' miRNA: 3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 13446 | 0.73 | 0.211815 |
Target: 5'- aCGAGGacuaCGACAccuggcugaaAGUCGGCaUGUCGCUg -3' miRNA: 3'- aGUUCCg---GCUGU----------UCAGCCG-GCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 23947 | 0.74 | 0.19557 |
Target: 5'- gUCAuccGGUgGACGAaUCGGCCGaCGCCg -3' miRNA: 3'- -AGUu--CCGgCUGUUcAGCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 34787 | 0.74 | 0.190402 |
Target: 5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3' miRNA: 3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 41606 | 0.75 | 0.165876 |
Target: 5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3' miRNA: 3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 35582 | 0.76 | 0.137218 |
Target: 5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3' miRNA: 3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 5140 | 0.76 | 0.133462 |
Target: 5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3' miRNA: 3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 18876 | 0.77 | 0.126234 |
Target: 5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3' miRNA: 3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 31457 | 0.77 | 0.121732 |
Target: 5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3' miRNA: 3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 6363 | 0.78 | 0.101958 |
Target: 5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3' miRNA: 3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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