miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 36024 0.67 0.481673
Target:  5'- aCAuGGGCCGcgacuACAccgGGcCGGCCGgccugCGCCu -3'
miRNA:   3'- aGU-UCCGGC-----UGU---UCaGCCGGCa----GCGG- -5'
26451 3' -57.1 NC_005357.1 + 26313 0.69 0.385819
Target:  5'- gUCGGGGCCaccGACGugcAGcCGGUCGUgGUCa -3'
miRNA:   3'- -AGUUCCGG---CUGU---UCaGCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 13880 0.72 0.266923
Target:  5'- gCGAuGGCCGGCGgccgcaaGGUCGuGCCGUucaacaagcagCGCCg -3'
miRNA:   3'- aGUU-CCGGCUGU-------UCAGC-CGGCA-----------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 30030 0.67 0.481673
Target:  5'- aUCAAGGCCGcauACAAGcgcgcaGGCaucgacUCGCCg -3'
miRNA:   3'- -AGUUCCGGC---UGUUCag----CCGgc----AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 37536 0.73 0.235267
Target:  5'- cCGuGGCCGAaaaCGAGgccGCCGUCGCCg -3'
miRNA:   3'- aGUuCCGGCU---GUUCagcCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 22495 0.66 0.565919
Target:  5'- cCAcGGCCGACAAGgaguUCGGCgG-CGaCa -3'
miRNA:   3'- aGUuCCGGCUGUUC----AGCCGgCaGCgG- -5'
26451 3' -57.1 NC_005357.1 + 41694 0.71 0.274486
Target:  5'- aCcuGGCCGGCGuuGUCGGCaaaGcCGCCc -3'
miRNA:   3'- aGuuCCGGCUGUu-CAGCCGg--CaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 17994 0.66 0.565919
Target:  5'- cCGAGGCCgcgcgcggcaccGACAAaUCgGGCCGgcugCGCUu -3'
miRNA:   3'- aGUUCCGG------------CUGUUcAG-CCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 32557 0.66 0.565919
Target:  5'- ---uGGCCGAgAAGcagCGcGCCGgUGCCa -3'
miRNA:   3'- aguuCCGGCUgUUCa--GC-CGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 5095 0.66 0.533733
Target:  5'- aCAGgcGGCCGGCccagcguccGGUgCGGCUGgCGCCg -3'
miRNA:   3'- aGUU--CCGGCUGu--------UCA-GCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4557 0.67 0.523146
Target:  5'- cUUGAGGCCGA--AGUCG-CCGaggCGCUg -3'
miRNA:   3'- -AGUUCCGGCUguUCAGCcGGCa--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 10315 0.67 0.523146
Target:  5'- gUCGAGGUCGGCAg--CGGCCagggCGUUg -3'
miRNA:   3'- -AGUUCCGGCUGUucaGCCGGca--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 33793 0.67 0.490871
Target:  5'- -gAAGGCCGGCGaccucgccaccgcAG-CGGCCGagaagCGCa -3'
miRNA:   3'- agUUCCGGCUGU-------------UCaGCCGGCa----GCGg -5'
26451 3' -57.1 NC_005357.1 + 14922 0.68 0.461539
Target:  5'- ----cGCCGAgAAGcuggCGGCCGagGCCg -3'
miRNA:   3'- aguucCGGCUgUUCa---GCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 34478 0.68 0.450657
Target:  5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3'
miRNA:   3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 2381 0.68 0.432198
Target:  5'- uUCGAGGCgcaCGGCA---UGGCgGUCGCUg -3'
miRNA:   3'- -AGUUCCG---GCUGUucaGCCGgCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4188 0.69 0.403975
Target:  5'- cUCGAuGGCgGGCAuGUUGGCCGcgagcacgUCGCg -3'
miRNA:   3'- -AGUU-CCGgCUGUuCAGCCGGC--------AGCGg -5'
26451 3' -57.1 NC_005357.1 + 20194 0.69 0.36821
Target:  5'- aUCGcGGCCGACAAccagGGCCG-CGUCa -3'
miRNA:   3'- -AGUuCCGGCUGUUcag-CCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 22208 0.7 0.342848
Target:  5'- cCAAGGCCaAC-AGcCGGCCGcgggCGCUg -3'
miRNA:   3'- aGUUCCGGcUGuUCaGCCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 10361 0.7 0.326653
Target:  5'- gCGGGGCCGAUGAGcaUGGC-GUCGCa -3'
miRNA:   3'- aGUUCCGGCUGUUCa-GCCGgCAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.