miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 9321 0.7 0.342848
Target:  5'- uUCAGGGCCuuggguucaugGGCGAGgauguaGGCCGcCGCg -3'
miRNA:   3'- -AGUUCCGG-----------CUGUUCag----CCGGCaGCGg -5'
26451 3' -57.1 NC_005357.1 + 10361 0.7 0.326653
Target:  5'- gCGGGGCCGAUGAGcaUGGC-GUCGCa -3'
miRNA:   3'- aGUUCCGGCUGUUCa-GCCGgCAGCGg -5'
26451 3' -57.1 NC_005357.1 + 34006 0.73 0.211815
Target:  5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3'
miRNA:   3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 18876 0.77 0.126234
Target:  5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3'
miRNA:   3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 2381 0.68 0.432198
Target:  5'- uUCGAGGCgcaCGGCA---UGGCgGUCGCUg -3'
miRNA:   3'- -AGUUCCG---GCUGUucaGCCGgCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 29384 0.69 0.369077
Target:  5'- ---cGGCCGcacuCAAGcaacgcgaugacgaGGCCGUCGCCa -3'
miRNA:   3'- aguuCCGGCu---GUUCag------------CCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 29876 0.71 0.295985
Target:  5'- gCGAGGCCGGCAAGaaauUCa-CCGaCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUUC----AGccGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 31457 0.77 0.121732
Target:  5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3'
miRNA:   3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 20194 0.69 0.36821
Target:  5'- aUCGcGGCCGACAAccagGGCCG-CGUCa -3'
miRNA:   3'- -AGUuCCGGCUGUUcag-CCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 6363 0.78 0.101958
Target:  5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3'
miRNA:   3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5'
26451 3' -57.1 NC_005357.1 + 4824 0.7 0.326653
Target:  5'- gUCGGGGCCGGC------GCCGUCGUCg -3'
miRNA:   3'- -AGUUCCGGCUGuucagcCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 22208 0.7 0.342848
Target:  5'- cCAAGGCCaAC-AGcCGGCCGcgggCGCUg -3'
miRNA:   3'- aGUUCCGGcUGuUCaGCCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 13880 0.72 0.266923
Target:  5'- gCGAuGGCCGGCGgccgcaaGGUCGuGCCGUucaacaagcagCGCCg -3'
miRNA:   3'- aGUU-CCGGCUGU-------UCAGC-CGGCA-----------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 18192 0.73 0.223279
Target:  5'- gCGAGGacaucaUCGAgAAGaUCGGCCGcUCGCCg -3'
miRNA:   3'- aGUUCC------GGCUgUUC-AGCCGGC-AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 34787 0.74 0.190402
Target:  5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3'
miRNA:   3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 5140 0.76 0.133462
Target:  5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3'
miRNA:   3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 34478 0.68 0.450657
Target:  5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3'
miRNA:   3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 24163 0.68 0.432198
Target:  5'- ---cGGCCGGCAAGuucUCGGCgcagGUCGUg -3'
miRNA:   3'- aguuCCGGCUGUUC---AGCCGg---CAGCGg -5'
26451 3' -57.1 NC_005357.1 + 4188 0.69 0.403975
Target:  5'- cUCGAuGGCgGGCAuGUUGGCCGcgagcacgUCGCg -3'
miRNA:   3'- -AGUU-CCGgCUGUuCAGCCGGC--------AGCGg -5'
26451 3' -57.1 NC_005357.1 + 35161 0.69 0.383142
Target:  5'- cCGAGGCCaagcagcaguucaaGACcuGggCGGCCGacaUCGCCg -3'
miRNA:   3'- aGUUCCGG--------------CUGuuCa-GCCGGC---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.