Results 61 - 80 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 19196 | 0.68 | 0.461539 |
Target: 5'- gCGAGGCgCGGucGGU-GGCCGagGCCg -3' miRNA: 3'- aGUUCCG-GCUguUCAgCCGGCagCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 18905 | 0.67 | 0.502222 |
Target: 5'- gUCAucAGGUCGAUgAGGUCGGCgccCG-CGCUg -3' miRNA: 3'- -AGU--UCCGGCUG-UUCAGCCG---GCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 18876 | 0.77 | 0.126234 |
Target: 5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3' miRNA: 3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 18463 | 0.73 | 0.229207 |
Target: 5'- gUCGcGGcGCCGGCGGcGUCGGCCGauUCGUCc -3' miRNA: 3'- -AGU-UC-CGGCUGUU-CAGCCGGC--AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 18368 | 0.66 | 0.544396 |
Target: 5'- ----uGCCGGCGgcgaGGUUGGCC-UUGCCg -3' miRNA: 3'- aguucCGGCUGU----UCAGCCGGcAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 18192 | 0.73 | 0.223279 |
Target: 5'- gCGAGGacaucaUCGAgAAGaUCGGCCGcUCGCCg -3' miRNA: 3'- aGUUCC------GGCUgUUC-AGCCGGC-AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 17994 | 0.66 | 0.565919 |
Target: 5'- cCGAGGCCgcgcgcggcaccGACAAaUCgGGCCGgcugCGCUu -3' miRNA: 3'- aGUUCCGG------------CUGUUcAG-CCGGCa---GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 17842 | 0.67 | 0.468536 |
Target: 5'- gCAAGGacacgccggacggcCCGACcguGGcCGGCC-UCGCCa -3' miRNA: 3'- aGUUCC--------------GGCUGu--UCaGCCGGcAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 17694 | 0.67 | 0.51264 |
Target: 5'- gUCGAGGCCGcGCAGGcgCGGUgGaaGCg -3' miRNA: 3'- -AGUUCCGGC-UGUUCa-GCCGgCagCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 16592 | 0.7 | 0.357912 |
Target: 5'- aCGAGGCCGACcacgcgaugguGUUGGC-GcCGCCg -3' miRNA: 3'- aGUUCCGGCUGuu---------CAGCCGgCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 16172 | 0.66 | 0.587655 |
Target: 5'- aCcAGGCCGGCGGGUgccCGuGCCuUCGgCg -3' miRNA: 3'- aGuUCCGGCUGUUCA---GC-CGGcAGCgG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 14922 | 0.68 | 0.461539 |
Target: 5'- ----cGCCGAgAAGcuggCGGCCGagGCCg -3' miRNA: 3'- aguucCGGCUgUUCa---GCCGGCagCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 14569 | 0.67 | 0.468536 |
Target: 5'- gCGAGcGCgGACAcguucuugagcagcGGcgCGGCCGgCGCCa -3' miRNA: 3'- aGUUC-CGgCUGU--------------UCa-GCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 14102 | 0.69 | 0.403975 |
Target: 5'- cCAAGGCCauCGAGUCcgacGCCGagcgCGCCg -3' miRNA: 3'- aGUUCCGGcuGUUCAGc---CGGCa---GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 13880 | 0.72 | 0.266923 |
Target: 5'- gCGAuGGCCGGCGgccgcaaGGUCGuGCCGUucaacaagcagCGCCg -3' miRNA: 3'- aGUU-CCGGCUGU-------UCAGC-CGGCA-----------GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 13446 | 0.73 | 0.211815 |
Target: 5'- aCGAGGacuaCGACAccuggcugaaAGUCGGCaUGUCGCUg -3' miRNA: 3'- aGUUCCg---GCUGU----------UCAGCCG-GCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 13308 | 0.75 | 0.169526 |
Target: 5'- cCGGGGCCGGCGuuguaggcggcguaGGcuuUCGGCagGUCGCCg -3' miRNA: 3'- aGUUCCGGCUGU--------------UC---AGCCGg-CAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 13160 | 0.7 | 0.342848 |
Target: 5'- cUCGAuGUCGGCcaguGUCGGCCG-CGCUg -3' miRNA: 3'- -AGUUcCGGCUGuu--CAGCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 12302 | 0.68 | 0.441859 |
Target: 5'- --cAGGCCGGCGgcguguucuGGcgCGGCCucaUCGCCu -3' miRNA: 3'- aguUCCGGCUGU---------UCa-GCCGGc--AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 12118 | 0.67 | 0.491898 |
Target: 5'- uUCAA--UCGGCAGGUUGGCgCGacgCGCCa -3' miRNA: 3'- -AGUUccGGCUGUUCAGCCG-GCa--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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