miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 19196 0.68 0.461539
Target:  5'- gCGAGGCgCGGucGGU-GGCCGagGCCg -3'
miRNA:   3'- aGUUCCG-GCUguUCAgCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 18905 0.67 0.502222
Target:  5'- gUCAucAGGUCGAUgAGGUCGGCgccCG-CGCUg -3'
miRNA:   3'- -AGU--UCCGGCUG-UUCAGCCG---GCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18876 0.77 0.126234
Target:  5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3'
miRNA:   3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 18463 0.73 0.229207
Target:  5'- gUCGcGGcGCCGGCGGcGUCGGCCGauUCGUCc -3'
miRNA:   3'- -AGU-UC-CGGCUGUU-CAGCCGGC--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18368 0.66 0.544396
Target:  5'- ----uGCCGGCGgcgaGGUUGGCC-UUGCCg -3'
miRNA:   3'- aguucCGGCUGU----UCAGCCGGcAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18192 0.73 0.223279
Target:  5'- gCGAGGacaucaUCGAgAAGaUCGGCCGcUCGCCg -3'
miRNA:   3'- aGUUCC------GGCUgUUC-AGCCGGC-AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 17994 0.66 0.565919
Target:  5'- cCGAGGCCgcgcgcggcaccGACAAaUCgGGCCGgcugCGCUu -3'
miRNA:   3'- aGUUCCGG------------CUGUUcAG-CCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 17842 0.67 0.468536
Target:  5'- gCAAGGacacgccggacggcCCGACcguGGcCGGCC-UCGCCa -3'
miRNA:   3'- aGUUCC--------------GGCUGu--UCaGCCGGcAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 17694 0.67 0.51264
Target:  5'- gUCGAGGCCGcGCAGGcgCGGUgGaaGCg -3'
miRNA:   3'- -AGUUCCGGC-UGUUCa-GCCGgCagCGg -5'
26451 3' -57.1 NC_005357.1 + 16592 0.7 0.357912
Target:  5'- aCGAGGCCGACcacgcgaugguGUUGGC-GcCGCCg -3'
miRNA:   3'- aGUUCCGGCUGuu---------CAGCCGgCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 16172 0.66 0.587655
Target:  5'- aCcAGGCCGGCGGGUgccCGuGCCuUCGgCg -3'
miRNA:   3'- aGuUCCGGCUGUUCA---GC-CGGcAGCgG- -5'
26451 3' -57.1 NC_005357.1 + 14922 0.68 0.461539
Target:  5'- ----cGCCGAgAAGcuggCGGCCGagGCCg -3'
miRNA:   3'- aguucCGGCUgUUCa---GCCGGCagCGG- -5'
26451 3' -57.1 NC_005357.1 + 14569 0.67 0.468536
Target:  5'- gCGAGcGCgGACAcguucuugagcagcGGcgCGGCCGgCGCCa -3'
miRNA:   3'- aGUUC-CGgCUGU--------------UCa-GCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 14102 0.69 0.403975
Target:  5'- cCAAGGCCauCGAGUCcgacGCCGagcgCGCCg -3'
miRNA:   3'- aGUUCCGGcuGUUCAGc---CGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 13880 0.72 0.266923
Target:  5'- gCGAuGGCCGGCGgccgcaaGGUCGuGCCGUucaacaagcagCGCCg -3'
miRNA:   3'- aGUU-CCGGCUGU-------UCAGC-CGGCA-----------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 13446 0.73 0.211815
Target:  5'- aCGAGGacuaCGACAccuggcugaaAGUCGGCaUGUCGCUg -3'
miRNA:   3'- aGUUCCg---GCUGU----------UCAGCCG-GCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 13308 0.75 0.169526
Target:  5'- cCGGGGCCGGCGuuguaggcggcguaGGcuuUCGGCagGUCGCCg -3'
miRNA:   3'- aGUUCCGGCUGU--------------UC---AGCCGg-CAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 13160 0.7 0.342848
Target:  5'- cUCGAuGUCGGCcaguGUCGGCCG-CGCUg -3'
miRNA:   3'- -AGUUcCGGCUGuu--CAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 12302 0.68 0.441859
Target:  5'- --cAGGCCGGCGgcguguucuGGcgCGGCCucaUCGCCu -3'
miRNA:   3'- aguUCCGGCUGU---------UCa-GCCGGc--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 12118 0.67 0.491898
Target:  5'- uUCAA--UCGGCAGGUUGGCgCGacgCGCCa -3'
miRNA:   3'- -AGUUccGGCUGUUCAGCCG-GCa--GCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.