miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 22208 0.7 0.342848
Target:  5'- cCAAGGCCaAC-AGcCGGCCGcgggCGCUg -3'
miRNA:   3'- aGUUCCGGcUGuUCaGCCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 22495 0.66 0.565919
Target:  5'- cCAcGGCCGACAAGgaguUCGGCgG-CGaCa -3'
miRNA:   3'- aGUuCCGGCUGUUC----AGCCGgCaGCgG- -5'
26451 3' -57.1 NC_005357.1 + 22773 0.67 0.51264
Target:  5'- -gAGGGCCGAUuGGUCaacgcccugcgGGCCGgucagcauggUGCCg -3'
miRNA:   3'- agUUCCGGCUGuUCAG-----------CCGGCa---------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 23178 0.66 0.544396
Target:  5'- aUCGAcGCCGAgAAGUUcaugGGCCuGaCGCCg -3'
miRNA:   3'- -AGUUcCGGCUgUUCAG----CCGG-CaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23544 0.67 0.471552
Target:  5'- aCGcGGUCGAUGgccUCGGCCGacaUCGCCg -3'
miRNA:   3'- aGUuCCGGCUGUuc-AGCCGGC---AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23683 0.7 0.342848
Target:  5'- cUCGgucGGGCCgGACAcGUacaGGCCGguagCGCCc -3'
miRNA:   3'- -AGU---UCCGG-CUGUuCAg--CCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 23944 0.69 0.36821
Target:  5'- gUCAGGcGCCGcccgGCgAGGUCGGCauUUGCCg -3'
miRNA:   3'- -AGUUC-CGGC----UG-UUCAGCCGgcAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23947 0.74 0.19557
Target:  5'- gUCAuccGGUgGACGAaUCGGCCGaCGCCg -3'
miRNA:   3'- -AGUu--CCGgCUGUUcAGCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 24163 0.68 0.432198
Target:  5'- ---cGGCCGGCAAGuucUCGGCgcagGUCGUg -3'
miRNA:   3'- aguuCCGGCUGUUC---AGCCGg---CAGCGg -5'
26451 3' -57.1 NC_005357.1 + 24301 0.67 0.471552
Target:  5'- -gGGGGCgGugAGGUCGGCgagcaGCCg -3'
miRNA:   3'- agUUCCGgCugUUCAGCCGgcag-CGG- -5'
26451 3' -57.1 NC_005357.1 + 24572 0.78 0.092583
Target:  5'- gCGAGGCCGGCcacGGUCgGGCCGUCcggcguguccuuGCCg -3'
miRNA:   3'- aGUUCCGGCUGu--UCAG-CCGGCAG------------CGG- -5'
26451 3' -57.1 NC_005357.1 + 25005 0.66 0.565919
Target:  5'- -gGGGGCCGACGAcagCGG--GUUGCCg -3'
miRNA:   3'- agUUCCGGCUGUUca-GCCggCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 25302 0.66 0.565919
Target:  5'- gUCGugcGGCCGGCccugccacCGGCgcuCGUCGCCg -3'
miRNA:   3'- -AGUu--CCGGCUGuuca----GCCG---GCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 25335 0.67 0.523146
Target:  5'- cCAAGGcCCGGcCGAGaacCGcGCCGgcuUCGCCu -3'
miRNA:   3'- aGUUCC-GGCU-GUUCa--GC-CGGC---AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 25504 0.67 0.491898
Target:  5'- gUCAGGGUCaGGCccgcgaugAGGUCGguuuuGCCGcCGCCg -3'
miRNA:   3'- -AGUUCCGG-CUG--------UUCAGC-----CGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 26313 0.69 0.385819
Target:  5'- gUCGGGGCCaccGACGugcAGcCGGUCGUgGUCa -3'
miRNA:   3'- -AGUUCCGG---CUGU---UCaGCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 26897 0.66 0.576764
Target:  5'- -gGAGGCCGGCAccgugcauaUCGGCC--UGCCc -3'
miRNA:   3'- agUUCCGGCUGUuc-------AGCCGGcaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28019 0.7 0.359614
Target:  5'- -gAAGaaGCCGAuCAuGUCGG-CGUCGCCg -3'
miRNA:   3'- agUUC--CGGCU-GUuCAGCCgGCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28117 0.68 0.440887
Target:  5'- cCAAGGCgCGcgccaguucagcaACGAcGUgGGCCGcaUCGCCg -3'
miRNA:   3'- aGUUCCG-GC-------------UGUU-CAgCCGGC--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 28448 0.71 0.281511
Target:  5'- gUCGAuuuCCGGCAcGUacaugaGGCCGUCGCCg -3'
miRNA:   3'- -AGUUcc-GGCUGUuCAg-----CCGGCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.