Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 28883 | 0.75 | 0.157487 |
Target: 5'- cUCGcuGCUGGCGuAGUugcUGGCCGUCGCCg -3' miRNA: 3'- -AGUucCGGCUGU-UCA---GCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 28894 | 0.66 | 0.587655 |
Target: 5'- gUCAGgcGGCCGACAGuUCGGCgCGgacggcaaacCGCUu -3' miRNA: 3'- -AGUU--CCGGCUGUUcAGCCG-GCa---------GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 28985 | 0.7 | 0.334679 |
Target: 5'- cCGAGGCCGcCAAGcUGGCgGgccUGCCg -3' miRNA: 3'- aGUUCCGGCuGUUCaGCCGgCa--GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 29384 | 0.69 | 0.369077 |
Target: 5'- ---cGGCCGcacuCAAGcaacgcgaugacgaGGCCGUCGCCa -3' miRNA: 3'- aguuCCGGCu---GUUCag------------CCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 29566 | 0.78 | 0.092583 |
Target: 5'- cUCGGGGUaucgCGuCAGGUCGGCCG-CGCCc -3' miRNA: 3'- -AGUUCCG----GCuGUUCAGCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 29876 | 0.71 | 0.295985 |
Target: 5'- gCGAGGCCGGCAAGaaauUCa-CCGaCGCCg -3' miRNA: 3'- aGUUCCGGCUGUUC----AGccGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 30030 | 0.67 | 0.481673 |
Target: 5'- aUCAAGGCCGcauACAAGcgcgcaGGCaucgacUCGCCg -3' miRNA: 3'- -AGUUCCGGC---UGUUCag----CCGgc----AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 31457 | 0.77 | 0.121732 |
Target: 5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3' miRNA: 3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 31707 | 0.7 | 0.35116 |
Target: 5'- gCAAGGCgaCGACGcauucaAGcaaUCGGCCGagGCCg -3' miRNA: 3'- aGUUCCG--GCUGU------UC---AGCCGGCagCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 32323 | 0.73 | 0.214066 |
Target: 5'- aUCAAGGCCGGCgucccgacaaccgccGcccaGGUCGcuGCgGUCGCCg -3' miRNA: 3'- -AGUUCCGGCUG---------------U----UCAGC--CGgCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 32557 | 0.66 | 0.565919 |
Target: 5'- ---uGGCCGAgAAGcagCGcGCCGgUGCCa -3' miRNA: 3'- aguuCCGGCUgUUCa--GC-CGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 33610 | 0.66 | 0.565919 |
Target: 5'- aUCAAGGCCGACAccaAGUaccGCC-UCGaCg -3' miRNA: 3'- -AGUUCCGGCUGU---UCAgc-CGGcAGCgG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 33793 | 0.67 | 0.490871 |
Target: 5'- -gAAGGCCGGCGaccucgccaccgcAG-CGGCCGagaagCGCa -3' miRNA: 3'- agUUCCGGCUGU-------------UCaGCCGGCa----GCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 34006 | 0.73 | 0.211815 |
Target: 5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3' miRNA: 3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 34200 | 0.69 | 0.36821 |
Target: 5'- ----cGCCGACGAGggcaCGGCCG-CGCa -3' miRNA: 3'- aguucCGGCUGUUCa---GCCGGCaGCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 34478 | 0.68 | 0.450657 |
Target: 5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3' miRNA: 3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 34787 | 0.74 | 0.190402 |
Target: 5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3' miRNA: 3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 35161 | 0.69 | 0.383142 |
Target: 5'- cCGAGGCCaagcagcaguucaaGACcuGggCGGCCGacaUCGCCg -3' miRNA: 3'- aGUUCCGG--------------CUGuuCa-GCCGGC---AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 35176 | 0.8 | 0.073651 |
Target: 5'- aCAAGGCCGGCGAcaUCGGCCcG-CGCCa -3' miRNA: 3'- aGUUCCGGCUGUUc-AGCCGG-CaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 35582 | 0.76 | 0.137218 |
Target: 5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3' miRNA: 3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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