Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 8814 | 0.67 | 0.489845 |
Target: 5'- gUCGAGGCgGuACuugguGUCGGCCuugauaccguccUCGCCg -3' miRNA: 3'- -AGUUCCGgC-UGuu---CAGCCGGc-----------AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 33793 | 0.67 | 0.490871 |
Target: 5'- -gAAGGCCGGCGaccucgccaccgcAG-CGGCCGagaagCGCa -3' miRNA: 3'- agUUCCGGCUGU-------------UCaGCCGGCa----GCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 12118 | 0.67 | 0.491898 |
Target: 5'- uUCAA--UCGGCAGGUUGGCgCGacgCGCCa -3' miRNA: 3'- -AGUUccGGCUGUUCAGCCG-GCa--GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 3867 | 0.67 | 0.491898 |
Target: 5'- cCAGGcGCCGuCGcuguAGgccgCGcuGCCGUCGCCg -3' miRNA: 3'- aGUUC-CGGCuGU----UCa---GC--CGGCAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 25504 | 0.67 | 0.491898 |
Target: 5'- gUCAGGGUCaGGCccgcgaugAGGUCGguuuuGCCGcCGCCg -3' miRNA: 3'- -AGUUCCGG-CUG--------UUCAGC-----CGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 11157 | 0.67 | 0.501185 |
Target: 5'- --uGGGCCGccugcGCAcguugcgugcgcuGGUCGGCCGUgGUg -3' miRNA: 3'- aguUCCGGC-----UGU-------------UCAGCCGGCAgCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 18905 | 0.67 | 0.502222 |
Target: 5'- gUCAucAGGUCGAUgAGGUCGGCgccCG-CGCUg -3' miRNA: 3'- -AGU--UCCGGCUG-UUCAGCCG---GCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 20730 | 0.67 | 0.502222 |
Target: 5'- aUC-AGGCCGACAug-CuGCUGgCGCCg -3' miRNA: 3'- -AGuUCCGGCUGUucaGcCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 36838 | 0.67 | 0.511594 |
Target: 5'- aCGAGGCgGACAucgacacGGUggCGGCCagcguuggCGCCg -3' miRNA: 3'- aGUUCCGgCUGU-------UCA--GCCGGca------GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 22773 | 0.67 | 0.51264 |
Target: 5'- -gAGGGCCGAUuGGUCaacgcccugcgGGCCGgucagcauggUGCCg -3' miRNA: 3'- agUUCCGGCUGuUCAG-----------CCGGCa---------GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 9098 | 0.67 | 0.51264 |
Target: 5'- gCGAGGCCGuucuuGCcGGUgGGCagguaUCGCCa -3' miRNA: 3'- aGUUCCGGC-----UGuUCAgCCGgc---AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 20222 | 0.67 | 0.51264 |
Target: 5'- cCGcGGCCGGCu-GUUGGCCuugggUGCCu -3' miRNA: 3'- aGUuCCGGCUGuuCAGCCGGca---GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 17694 | 0.67 | 0.51264 |
Target: 5'- gUCGAGGCCGcGCAGGcgCGGUgGaaGCg -3' miRNA: 3'- -AGUUCCGGC-UGUUCa-GCCGgCagCGg -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 1033 | 0.67 | 0.523146 |
Target: 5'- -gAAGGCCacGGCcGG-CGGCagcauGUCGCCg -3' miRNA: 3'- agUUCCGG--CUGuUCaGCCGg----CAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 10315 | 0.67 | 0.523146 |
Target: 5'- gUCGAGGUCGGCAg--CGGCCagggCGUUg -3' miRNA: 3'- -AGUUCCGGCUGUucaGCCGGca--GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 25335 | 0.67 | 0.523146 |
Target: 5'- cCAAGGcCCGGcCGAGaacCGcGCCGgcuUCGCCu -3' miRNA: 3'- aGUUCC-GGCU-GUUCa--GC-CGGC---AGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 4557 | 0.67 | 0.523146 |
Target: 5'- cUUGAGGCCGA--AGUCG-CCGaggCGCUg -3' miRNA: 3'- -AGUUCCGGCUguUCAGCcGGCa--GCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 5095 | 0.66 | 0.533733 |
Target: 5'- aCAGgcGGCCGGCccagcguccGGUgCGGCUGgCGCCg -3' miRNA: 3'- aGUU--CCGGCUGu--------UCA-GCCGGCaGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 18368 | 0.66 | 0.544396 |
Target: 5'- ----uGCCGGCGgcgaGGUUGGCC-UUGCCg -3' miRNA: 3'- aguucCGGCUGU----UCAGCCGGcAGCGG- -5' |
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26451 | 3' | -57.1 | NC_005357.1 | + | 23178 | 0.66 | 0.544396 |
Target: 5'- aUCGAcGCCGAgAAGUUcaugGGCCuGaCGCCg -3' miRNA: 3'- -AGUUcCGGCUgUUCAG----CCGG-CaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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