Results 81 - 100 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 4188 | 0.69 | 0.403975 |
Target: 5'- cUCGAuGGCgGGCAuGUUGGCCGcgagcacgUCGCg -3' miRNA: 3'- -AGUU-CCGgCUGUuCAGCCGGC--------AGCGg -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 14102 | 0.69 | 0.403975 |
Target: 5'- cCAAGGCCauCGAGUCcgacGCCGagcgCGCCg -3' miRNA: 3'- aGUUCCGGcuGUUCAGc---CGGCa---GCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 40003 | 0.68 | 0.422662 |
Target: 5'- uUCGAGGCCGGCcuG-CuGCCGUacaccuacgcuUGCCg -3' miRNA: 3'- -AGUUCCGGCUGuuCaGcCGGCA-----------GCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 2381 | 0.68 | 0.432198 |
Target: 5'- uUCGAGGCgcaCGGCA---UGGCgGUCGCUg -3' miRNA: 3'- -AGUUCCG---GCUGUucaGCCGgCAGCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 24163 | 0.68 | 0.432198 |
Target: 5'- ---cGGCCGGCAAGuucUCGGCgcagGUCGUg -3' miRNA: 3'- aguuCCGGCUGUUC---AGCCGg---CAGCGg -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 28117 | 0.68 | 0.440887 |
Target: 5'- cCAAGGCgCGcgccaguucagcaACGAcGUgGGCCGcaUCGCCg -3' miRNA: 3'- aGUUCCG-GC-------------UGUU-CAgCCGGC--AGCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 12302 | 0.68 | 0.441859 |
Target: 5'- --cAGGCCGGCGgcguguucuGGcgCGGCCucaUCGCCu -3' miRNA: 3'- aguUCCGGCUGU---------UCa-GCCGGc--AGCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 34478 | 0.68 | 0.450657 |
Target: 5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3' miRNA: 3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 19196 | 0.68 | 0.461539 |
Target: 5'- gCGAGGCgCGGucGGU-GGCCGagGCCg -3' miRNA: 3'- aGUUCCG-GCUguUCAgCCGGCagCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 6661 | 0.68 | 0.461539 |
Target: 5'- cCGGGgaaGCCGuCGuAGUUGGCCuugagGUCGCCa -3' miRNA: 3'- aGUUC---CGGCuGU-UCAGCCGG-----CAGCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 14922 | 0.68 | 0.461539 |
Target: 5'- ----cGCCGAgAAGcuggCGGCCGagGCCg -3' miRNA: 3'- aguucCGGCUgUUCa---GCCGGCagCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 14569 | 0.67 | 0.468536 |
Target: 5'- gCGAGcGCgGACAcguucuugagcagcGGcgCGGCCGgCGCCa -3' miRNA: 3'- aGUUC-CGgCUGU--------------UCa-GCCGGCaGCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 17842 | 0.67 | 0.468536 |
Target: 5'- gCAAGGacacgccggacggcCCGACcguGGcCGGCC-UCGCCa -3' miRNA: 3'- aGUUCC--------------GGCUGu--UCaGCCGGcAGCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 30030 | 0.67 | 0.481673 |
Target: 5'- aUCAAGGCCGcauACAAGcgcgcaGGCaucgacUCGCCg -3' miRNA: 3'- -AGUUCCGGC---UGUUCag----CCGgc----AGCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 36024 | 0.67 | 0.481673 |
Target: 5'- aCAuGGGCCGcgacuACAccgGGcCGGCCGgccugCGCCu -3' miRNA: 3'- aGU-UCCGGC-----UGU---UCaGCCGGCa----GCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 8814 | 0.67 | 0.489845 |
Target: 5'- gUCGAGGCgGuACuugguGUCGGCCuugauaccguccUCGCCg -3' miRNA: 3'- -AGUUCCGgC-UGuu---CAGCCGGc-----------AGCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 33793 | 0.67 | 0.490871 |
Target: 5'- -gAAGGCCGGCGaccucgccaccgcAG-CGGCCGagaagCGCa -3' miRNA: 3'- agUUCCGGCUGU-------------UCaGCCGGCa----GCGg -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 36838 | 0.67 | 0.511594 |
Target: 5'- aCGAGGCgGACAucgacacGGUggCGGCCagcguuggCGCCg -3' miRNA: 3'- aGUUCCGgCUGU-------UCA--GCCGGca------GCGG- -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 17694 | 0.67 | 0.51264 |
Target: 5'- gUCGAGGCCGcGCAGGcgCGGUgGaaGCg -3' miRNA: 3'- -AGUUCCGGC-UGUUCa-GCCGgCagCGg -5' |
|||||||
26451 | 3' | -57.1 | NC_005357.1 | + | 10315 | 0.67 | 0.523146 |
Target: 5'- gUCGAGGUCGGCAg--CGGCCagggCGUUg -3' miRNA: 3'- -AGUUCCGGCUGUucaGCCGGca--GCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home