Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26452 | 3' | -65.2 | NC_005357.1 | + | 37798 | 1.06 | 0.000109 |
Target: 5'- uGCCGACCCUGCGGCAGCGCGGGCCAAc -3' miRNA: 3'- -CGGCUGGGACGCCGUCGCGCCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 30224 | 0.83 | 0.009389 |
Target: 5'- cCCGACCagggGCaGGCAGCGCGGGCCGGu -3' miRNA: 3'- cGGCUGGga--CG-CCGUCGCGCCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 41127 | 0.76 | 0.034101 |
Target: 5'- gGCCGucGCCCUgggcGCGGCGGUGUGGGCgGg -3' miRNA: 3'- -CGGC--UGGGA----CGCCGUCGCGCCCGgUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 31026 | 0.75 | 0.042793 |
Target: 5'- uGCCGGCCga--GGCAaucGCGCGGGCCAAc -3' miRNA: 3'- -CGGCUGGgacgCCGU---CGCGCCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 14991 | 0.73 | 0.053637 |
Target: 5'- cGCCaGGgCCUGCGGCcgccgGGCGCGGugcGCCAGg -3' miRNA: 3'- -CGG-CUgGGACGCCG-----UCGCGCC---CGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 28545 | 0.72 | 0.065098 |
Target: 5'- gGCaCGACCUUGCGGCcgccggccaucgcGGCGCGcacgucGGCCAc -3' miRNA: 3'- -CG-GCUGGGACGCCG-------------UCGCGC------CCGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 1763 | 0.71 | 0.086222 |
Target: 5'- gGCCGGCCUgcGCcuGGC-GCGuCGGGCCGAu -3' miRNA: 3'- -CGGCUGGGa-CG--CCGuCGC-GCCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 10117 | 0.71 | 0.081577 |
Target: 5'- cGCCGGCCUUGaUGGCGGCGaUGaGGUCGc -3' miRNA: 3'- -CGGCUGGGAC-GCCGUCGC-GC-CCGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 529 | 0.71 | 0.079344 |
Target: 5'- gGCCGAauaCCU-CGGaCGuGCGCGGGCCGc -3' miRNA: 3'- -CGGCUg--GGAcGCC-GU-CGCGCCCGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 30562 | 0.71 | 0.075054 |
Target: 5'- uGCCGGCCgcuguagaUGCGGCAGaugGUGGGCUGGg -3' miRNA: 3'- -CGGCUGGg-------ACGCCGUCg--CGCCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 4040 | 0.7 | 0.104538 |
Target: 5'- aGCCGGCC--GCGGCgAGCGgCaGGCCAGc -3' miRNA: 3'- -CGGCUGGgaCGCCG-UCGC-GcCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 19598 | 0.7 | 0.101713 |
Target: 5'- uGUCGGCUgU-CGGCAGCGCggcgaagucGGGCCAGu -3' miRNA: 3'- -CGGCUGGgAcGCCGUCGCG---------CCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 7229 | 0.7 | 0.093665 |
Target: 5'- ---aGCCCUGCaacuucGGCcacuGGCGCGGGCCGAu -3' miRNA: 3'- cggcUGGGACG------CCG----UCGCGCCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 27558 | 0.7 | 0.090368 |
Target: 5'- aGCCGggcaacuuaaaggcGCCCaGCGuGCGGCGCuGGCCGc -3' miRNA: 3'- -CGGC--------------UGGGaCGC-CGUCGCGcCCGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 27830 | 0.7 | 0.091118 |
Target: 5'- cGCUG-CCC-GCGGUGGCGCcGGCCGc -3' miRNA: 3'- -CGGCuGGGaCGCCGUCGCGcCCGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 4018 | 0.7 | 0.096278 |
Target: 5'- cGCCGGCCaccaGCGucauGCcGCGCGGGUCGAg -3' miRNA: 3'- -CGGCUGGga--CGC----CGuCGCGCCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 41251 | 0.69 | 0.113462 |
Target: 5'- gGCCGACCCcgGCGGCgagacuauguggGGCGUGaccGCCGc -3' miRNA: 3'- -CGGCUGGGa-CGCCG------------UCGCGCc--CGGUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 9192 | 0.69 | 0.123093 |
Target: 5'- cGUCGACguuggCCUGCucGGCGGCGCGGcGCaCGu -3' miRNA: 3'- -CGGCUG-----GGACG--CCGUCGCGCC-CG-GUu -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 679 | 0.69 | 0.123093 |
Target: 5'- gGCCG-CCUa-CGGCGGCGCcGGCCGGg -3' miRNA: 3'- -CGGCuGGGacGCCGUCGCGcCCGGUU- -5' |
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26452 | 3' | -65.2 | NC_005357.1 | + | 24422 | 0.69 | 0.110411 |
Target: 5'- aGCCGGCCCgauuUGuCGGUgccGCGCGcGGCCu- -3' miRNA: 3'- -CGGCUGGG----AC-GCCGu--CGCGC-CCGGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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