miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26452 5' -55.8 NC_005357.1 + 12310 0.66 0.597476
Target:  5'- cGGCgUGuuCUGGcGCGGCcucAUCGCcuggGACa -3'
miRNA:   3'- -CCG-ACugGACC-CGCCG---UAGCGua--UUG- -5'
26452 5' -55.8 NC_005357.1 + 12267 0.66 0.575121
Target:  5'- cGGUagUGuCCUGGGCGG-GUUGC-UGGCc -3'
miRNA:   3'- -CCG--ACuGGACCCGCCgUAGCGuAUUG- -5'
26452 5' -55.8 NC_005357.1 + 32225 0.67 0.552961
Target:  5'- cGCcGACCaucGGGcCGGCGUgCGCuUGACg -3'
miRNA:   3'- cCGaCUGGa--CCC-GCCGUA-GCGuAUUG- -5'
26452 5' -55.8 NC_005357.1 + 41620 0.67 0.552961
Target:  5'- cGGCaaGGgCUGGGCGcggcGCGUCGCcgGAa -3'
miRNA:   3'- -CCGa-CUgGACCCGC----CGUAGCGuaUUg -5'
26452 5' -55.8 NC_005357.1 + 9312 0.67 0.552961
Target:  5'- cGGC-GACCU-GGCGGCGcacgucggCGCGgcgGGCg -3'
miRNA:   3'- -CCGaCUGGAcCCGCCGUa-------GCGUa--UUG- -5'
26452 5' -55.8 NC_005357.1 + 1998 0.67 0.541976
Target:  5'- uGGCUGAUCuUGaGGCccaGGCGcUCGC-UGGCg -3'
miRNA:   3'- -CCGACUGG-AC-CCG---CCGU-AGCGuAUUG- -5'
26452 5' -55.8 NC_005357.1 + 35984 0.67 0.498841
Target:  5'- cGGCgacGCCUucgcGGGCGGUgguGUCGCG-AGCg -3'
miRNA:   3'- -CCGac-UGGA----CCCGCCG---UAGCGUaUUG- -5'
26452 5' -55.8 NC_005357.1 + 10356 0.67 0.498841
Target:  5'- uGUUGGCg-GGGCcgaugagcauGGCGUCGCAUAGu -3'
miRNA:   3'- cCGACUGgaCCCG----------CCGUAGCGUAUUg -5'
26452 5' -55.8 NC_005357.1 + 27603 0.68 0.488293
Target:  5'- cGGCaucGACCUGGGCgaaGGCAgcgcCGCcgAGg -3'
miRNA:   3'- -CCGa--CUGGACCCG---CCGUa---GCGuaUUg -5'
26452 5' -55.8 NC_005357.1 + 22799 0.68 0.47785
Target:  5'- cGCUGGCCgaugucGCGGCc-CGCAUGACc -3'
miRNA:   3'- cCGACUGGacc---CGCCGuaGCGUAUUG- -5'
26452 5' -55.8 NC_005357.1 + 4531 0.68 0.447209
Target:  5'- uGGC-GugCUGGGCGGUcgUGCcgccGCg -3'
miRNA:   3'- -CCGaCugGACCCGCCGuaGCGuau-UG- -5'
26452 5' -55.8 NC_005357.1 + 37725 0.68 0.447209
Target:  5'- gGGCU-ACgaGGGCGGCGUCGg----- -3'
miRNA:   3'- -CCGAcUGgaCCCGCCGUAGCguauug -5'
26452 5' -55.8 NC_005357.1 + 29175 0.68 0.43625
Target:  5'- aGGCUuccucGACUUGGGCcucggugaugaccGGCAggucggacgcgCGCAUGGCg -3'
miRNA:   3'- -CCGA-----CUGGACCCG-------------CCGUa----------GCGUAUUG- -5'
26452 5' -55.8 NC_005357.1 + 9198 0.69 0.4274
Target:  5'- cGUUGGCCUGcucGGCGGCGcggCGCAc--- -3'
miRNA:   3'- cCGACUGGAC---CCGCCGUa--GCGUauug -5'
26452 5' -55.8 NC_005357.1 + 11850 0.69 0.417692
Target:  5'- cGGUUGGCCUGGGCGaaccccgcGCcaauAUCGCccAUGAg -3'
miRNA:   3'- -CCGACUGGACCCGC--------CG----UAGCG--UAUUg -5'
26452 5' -55.8 NC_005357.1 + 11600 0.69 0.413846
Target:  5'- cGGCUGGCCgccGGGCaGCAgugccagcggaaGCAUGAg -3'
miRNA:   3'- -CCGACUGGa--CCCGcCGUag----------CGUAUUg -5'
26452 5' -55.8 NC_005357.1 + 26269 0.69 0.408119
Target:  5'- cGCcGGCCUGGuCGGCucgCGCAUcGCg -3'
miRNA:   3'- cCGaCUGGACCcGCCGua-GCGUAuUG- -5'
26452 5' -55.8 NC_005357.1 + 13456 0.69 0.398685
Target:  5'- uGGC-GGCCUcgGGcGCGGUGUCggGCAUGACc -3'
miRNA:   3'- -CCGaCUGGA--CC-CGCCGUAG--CGUAUUG- -5'
26452 5' -55.8 NC_005357.1 + 8598 0.69 0.389392
Target:  5'- cGGC-GACCgugGGGaUGGCGUagGCGUGGCc -3'
miRNA:   3'- -CCGaCUGGa--CCC-GCCGUAg-CGUAUUG- -5'
26452 5' -55.8 NC_005357.1 + 6703 0.7 0.380242
Target:  5'- aGGCacaccuUGuCCUGGGCGcGCAUCuGCuugAGCa -3'
miRNA:   3'- -CCG------ACuGGACCCGC-CGUAG-CGua-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.