miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 4944 1.09 0.000087
Target:  5'- gAGGCCGCCGUCGCCGCGCUGGGCAACg -3'
miRNA:   3'- -UCCGGCGGCAGCGGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 25150 0.8 0.019821
Target:  5'- cGG-CGCCGggcgCGCUGCGCUGGGUGGCg -3'
miRNA:   3'- uCCgGCGGCa---GCGGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 24621 0.78 0.028744
Target:  5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3'
miRNA:   3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 11592 0.77 0.032215
Target:  5'- aGGGCCGCCGgcugGCCGC-C-GGGCAGCa -3'
miRNA:   3'- -UCCGGCGGCag--CGGCGcGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 12358 0.76 0.037136
Target:  5'- -cGCCGCCGUaGCCGgcaCGCUGGGcCAGCa -3'
miRNA:   3'- ucCGGCGGCAgCGGC---GCGACCC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 13168 0.75 0.045284
Target:  5'- cGGCCagUGUCgGCCGCGCUGGGCGc- -3'
miRNA:   3'- uCCGGcgGCAG-CGGCGCGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 41704 0.75 0.047917
Target:  5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3'
miRNA:   3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5'
26453 3' -64.4 NC_005357.1 + 6911 0.74 0.052148
Target:  5'- gGGGCCuacgaaaagGCCGUCGCCGa---GGGCAACg -3'
miRNA:   3'- -UCCGG---------CGGCAGCGGCgcgaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 14348 0.73 0.065281
Target:  5'- uGGGCCGCa-UCGCCGacaGCaUGGuGCAGCa -3'
miRNA:   3'- -UCCGGCGgcAGCGGCg--CG-ACC-CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 28557 0.73 0.069226
Target:  5'- cGGCCGCCGgccaUCGCgGCGCgcacgucggccaccGGCAGCg -3'
miRNA:   3'- uCCGGCGGC----AGCGgCGCGac------------CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 4447 0.73 0.070987
Target:  5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3'
miRNA:   3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 1371 0.72 0.076957
Target:  5'- uGGUgGCCGUCGCCcuggGCGCggcggugUGGGCGGg -3'
miRNA:   3'- uCCGgCGGCAGCGG----CGCG-------ACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 36671 0.72 0.079344
Target:  5'- aAGGCCcuggcgcacucGCUGccCGgCGCGCUGGGCGAUc -3'
miRNA:   3'- -UCCGG-----------CGGCa-GCgGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 13084 0.72 0.086222
Target:  5'- gAGGCCGUCGcCaCUGCGCUGcGCGGCc -3'
miRNA:   3'- -UCCGGCGGCaGcGGCGCGACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 14852 0.71 0.088638
Target:  5'- uGGCgGCCaG-CGCCGCacGCUGGGCGc- -3'
miRNA:   3'- uCCGgCGG-CaGCGGCG--CGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 23236 0.71 0.088638
Target:  5'- cGGCCaCCGaccgCGCCuCGCUGGGgAACa -3'
miRNA:   3'- uCCGGcGGCa---GCGGcGCGACCCgUUG- -5'
26453 3' -64.4 NC_005357.1 + 11157 0.71 0.090868
Target:  5'- uGGGCCGCCugcgcacGUUGCgUGCGCUGGuCGGCc -3'
miRNA:   3'- -UCCGGCGG-------CAGCG-GCGCGACCcGUUG- -5'
26453 3' -64.4 NC_005357.1 + 34229 0.71 0.093665
Target:  5'- uGGCCGCCauGUCGCUGaCGaacGGGCAGg -3'
miRNA:   3'- uCCGGCGG--CAGCGGC-GCga-CCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 20362 0.71 0.096278
Target:  5'- cGGCCGCCGagcaaccCGCUacugGUGC-GGGCAACg -3'
miRNA:   3'- uCCGGCGGCa------GCGG----CGCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 37934 0.71 0.096278
Target:  5'- gAGGCCGaaGUCGCCgagGCGCUGcucggugcgccaGGCGAg -3'
miRNA:   3'- -UCCGGCggCAGCGG---CGCGAC------------CCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.