Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26453 | 3' | -64.4 | NC_005357.1 | + | 677 | 0.69 | 0.140845 |
Target: 5'- cAGGCCGCCuacggcggCGCCG-GCcGGGCcGCc -3' miRNA: 3'- -UCCGGCGGca------GCGGCgCGaCCCGuUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 748 | 0.66 | 0.231322 |
Target: 5'- cGGCCcgGCCGgCGCCGC-CguaGGCGGCc -3' miRNA: 3'- uCCGG--CGGCaGCGGCGcGac-CCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 1284 | 0.7 | 0.104538 |
Target: 5'- gAGGugaugcCCGCCcacacCGCCGCGCccaGGGCGACg -3' miRNA: 3'- -UCC------GGCGGca---GCGGCGCGa--CCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 1371 | 0.72 | 0.076957 |
Target: 5'- uGGUgGCCGUCGCCcuggGCGCggcggugUGGGCGGg -3' miRNA: 3'- uCCGgCGGCAGCGG----CGCG-------ACCCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 1522 | 0.69 | 0.12958 |
Target: 5'- gAGGCCGCCGaccgCGCCGUcaagaagguguuuGCcaucuUGGGCGu- -3' miRNA: 3'- -UCCGGCGGCa---GCGGCG-------------CG-----ACCCGUug -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 2155 | 0.7 | 0.106851 |
Target: 5'- uGGGCgCGCUacauggacgacaUCGUgGUGCUGGGCGACg -3' miRNA: 3'- -UCCG-GCGGc-----------AGCGgCGCGACCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 3543 | 0.66 | 0.231322 |
Target: 5'- cGGGCCGUCGuucUCGuUCGCGUucuucgGGGCGcGCg -3' miRNA: 3'- -UCCGGCGGC---AGC-GGCGCGa-----CCCGU-UG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 3548 | 0.69 | 0.137116 |
Target: 5'- aGGcGCCGCCGaauagCGCagcagCGgGCUGGGCGuACa -3' miRNA: 3'- -UC-CGGCGGCa----GCG-----GCgCGACCCGU-UG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 3749 | 0.68 | 0.156703 |
Target: 5'- uGGGCaCGUCGgUGCCGcCGCUGGacGUAGCc -3' miRNA: 3'- -UCCG-GCGGCaGCGGC-GCGACC--CGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 3883 | 0.67 | 0.183523 |
Target: 5'- uAGGCCgcgcuGCCGUCGCCGCcgaaCUuGGUAGa -3' miRNA: 3'- -UCCGG-----CGGCAGCGGCGc---GAcCCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 4354 | 0.69 | 0.140845 |
Target: 5'- uGGCCGUugCGUUGCCgguGCGCgugaaGGCGACg -3' miRNA: 3'- uCCGGCG--GCAGCGG---CGCGac---CCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 4447 | 0.73 | 0.070987 |
Target: 5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 4944 | 1.09 | 0.000087 |
Target: 5'- gAGGCCGCCGUCGCCGCGCUGGGCAACg -3' miRNA: 3'- -UCCGGCGGCAGCGGCGCGACCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 5632 | 0.66 | 0.208895 |
Target: 5'- cGGCCagcguuggcGCCGUCGauaCCGUGgC-GGGCGACc -3' miRNA: 3'- uCCGG---------CGGCAGC---GGCGC-GaCCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 6242 | 0.68 | 0.152593 |
Target: 5'- aGGGCCugcacGCCGguaacggUGCgguugaucugCGCGCUGGGCAGg -3' miRNA: 3'- -UCCGG-----CGGCa------GCG----------GCGCGACCCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 6649 | 0.68 | 0.17416 |
Target: 5'- uGG-UGCCG--GCCGUGCUGGGCuACu -3' miRNA: 3'- uCCgGCGGCagCGGCGCGACCCGuUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 6911 | 0.74 | 0.052148 |
Target: 5'- gGGGCCuacgaaaagGCCGUCGCCGa---GGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGGCgcgaCCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 8212 | 0.67 | 0.18837 |
Target: 5'- cGGCC-UCGUaGUCGCGCUGGuCGGCg -3' miRNA: 3'- uCCGGcGGCAgCGGCGCGACCcGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 8748 | 0.66 | 0.230738 |
Target: 5'- aGGGCgCGCgCGUauucacgUGCCGCuucGGGCAGCa -3' miRNA: 3'- -UCCG-GCG-GCA-------GCGGCGcgaCCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 8977 | 0.66 | 0.225532 |
Target: 5'- cGGUaaCGCCucgauuuccUCGCCGCGCggGGGCGc- -3' miRNA: 3'- uCCG--GCGGc--------AGCGGCGCGa-CCCGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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