miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 9320 0.68 0.165225
Target:  5'- uGGCggCGCaCGUCGgCGCgGC-GGGCGGCg -3'
miRNA:   3'- uCCG--GCG-GCAGCgGCG-CGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 10332 0.67 0.20359
Target:  5'- cAGGCCGUa---GCCGuCGCUGcGGCGu- -3'
miRNA:   3'- -UCCGGCGgcagCGGC-GCGAC-CCGUug -5'
26453 3' -64.4 NC_005357.1 + 10548 0.7 0.107144
Target:  5'- cGGCCcguucggGCCGgUGCUGCGCgacuuccaGGGCGACg -3'
miRNA:   3'- uCCGG-------CGGCaGCGGCGCGa-------CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 10819 0.68 0.17416
Target:  5'- cGGGCCGaaGUCGagCGCGCccuUGGcgaGCAGCa -3'
miRNA:   3'- -UCCGGCggCAGCg-GCGCG---ACC---CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 11157 0.71 0.090868
Target:  5'- uGGGCCGCCugcgcacGUUGCgUGCGCUGGuCGGCc -3'
miRNA:   3'- -UCCGGCGG-------CAGCG-GCGCGACCcGUUG- -5'
26453 3' -64.4 NC_005357.1 + 11592 0.77 0.032215
Target:  5'- aGGGCCGCCGgcugGCCGC-C-GGGCAGCa -3'
miRNA:   3'- -UCCGGCGGCag--CGGCGcGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 11650 0.69 0.133478
Target:  5'- cGGCCaGCCG--GCgGCcCUGGGCGGCa -3'
miRNA:   3'- uCCGG-CGGCagCGgCGcGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 11834 0.67 0.18837
Target:  5'- cAGaCCgGCCG-CGCCGCGguuggcCUGGGCGAa -3'
miRNA:   3'- -UCcGG-CGGCaGCGGCGC------GACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 12092 0.66 0.230738
Target:  5'- uGGGCaagaccuCGCCGgccacgGCCGCGCUGcuGGcCGACg -3'
miRNA:   3'- -UCCG-------GCGGCag----CGGCGCGAC--CC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 12295 0.66 0.208359
Target:  5'- -uGCCGCUGUUGCCgguGUGCUgcgucccgaccagGGGCAGg -3'
miRNA:   3'- ucCGGCGGCAGCGG---CGCGA-------------CCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 12358 0.76 0.037136
Target:  5'- -cGCCGCCGUaGCCGgcaCGCUGGGcCAGCa -3'
miRNA:   3'- ucCGGCGGCAgCGGC---GCGACCC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 12741 0.69 0.144666
Target:  5'- cGGGCC-UCGacacgCGCCuGCGCaugaUGGGCGACg -3'
miRNA:   3'- -UCCGGcGGCa----GCGG-CGCG----ACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 13084 0.72 0.086222
Target:  5'- gAGGCCGUCGcCaCUGCGCUGcGCGGCc -3'
miRNA:   3'- -UCCGGCGGCaGcGGCGCGACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 13168 0.75 0.045284
Target:  5'- cGGCCagUGUCgGCCGCGCUGGGCGc- -3'
miRNA:   3'- uCCGGcgGCAG-CGGCGCGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 13454 0.68 0.17416
Target:  5'- -uGCCGCCuacaacCG-CGCGCUGGGCAu- -3'
miRNA:   3'- ucCGGCGGca----GCgGCGCGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 14348 0.73 0.065281
Target:  5'- uGGGCCGCa-UCGCCGacaGCaUGGuGCAGCa -3'
miRNA:   3'- -UCCGGCGgcAGCGGCg--CG-ACC-CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 14425 0.68 0.17416
Target:  5'- cAGGCgCGCCugcggCaCCGUGUUGGGCGAa -3'
miRNA:   3'- -UCCG-GCGGca---GcGGCGCGACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 14852 0.71 0.088638
Target:  5'- uGGCgGCCaG-CGCCGCacGCUGGGCGc- -3'
miRNA:   3'- uCCGgCGG-CaGCGGCG--CGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 14974 0.71 0.102835
Target:  5'- gAGGCCgGCCagcagcagaUCGCCGCGCagacccugaaagccGGGCAACu -3'
miRNA:   3'- -UCCGG-CGGc--------AGCGGCGCGa-------------CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 15688 0.68 0.169193
Target:  5'- cAGGCCGCUaUCGacgaagaaggcguCCGC-CUGGGCAu- -3'
miRNA:   3'- -UCCGGCGGcAGC-------------GGCGcGACCCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.