Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26453 | 3' | -64.4 | NC_005357.1 | + | 25020 | 0.68 | 0.164354 |
Target: 5'- cGGGuuGCCGUCcgagucaaaccacguGUCGCGCgauccgccguuaccaUcGGGCAGCa -3' miRNA: 3'- -UCCggCGGCAG---------------CGGCGCG---------------A-CCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 28822 | 0.68 | 0.156703 |
Target: 5'- -aGCgCGCCGUCGUCGgGUUGcGGCcgGACu -3' miRNA: 3'- ucCG-GCGGCAGCGGCgCGAC-CCG--UUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 1284 | 0.7 | 0.104538 |
Target: 5'- gAGGugaugcCCGCCcacacCGCCGCGCccaGGGCGACg -3' miRNA: 3'- -UCC------GGCGGca---GCGGCGCGa--CCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 34229 | 0.71 | 0.093665 |
Target: 5'- uGGCCGCCauGUCGCUGaCGaacGGGCAGg -3' miRNA: 3'- uCCGGCGG--CAGCGGC-GCga-CCCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 11157 | 0.71 | 0.090868 |
Target: 5'- uGGGCCGCCugcgcacGUUGCgUGCGCUGGuCGGCc -3' miRNA: 3'- -UCCGGCGG-------CAGCG-GCGCGACCcGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 23236 | 0.71 | 0.088638 |
Target: 5'- cGGCCaCCGaccgCGCCuCGCUGGGgAACa -3' miRNA: 3'- uCCGGcGGCa---GCGGcGCGACCCgUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 14852 | 0.71 | 0.088638 |
Target: 5'- uGGCgGCCaG-CGCCGCacGCUGGGCGc- -3' miRNA: 3'- uCCGgCGG-CaGCGGCG--CGACCCGUug -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 36671 | 0.72 | 0.079344 |
Target: 5'- aAGGCCcuggcgcacucGCUGccCGgCGCGCUGGGCGAUc -3' miRNA: 3'- -UCCGG-----------CGGCa-GCgGCGCGACCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 28557 | 0.73 | 0.069226 |
Target: 5'- cGGCCGCCGgccaUCGCgGCGCgcacgucggccaccGGCAGCg -3' miRNA: 3'- uCCGGCGGC----AGCGgCGCGac------------CCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 13168 | 0.75 | 0.045284 |
Target: 5'- cGGCCagUGUCgGCCGCGCUGGGCGc- -3' miRNA: 3'- uCCGGcgGCAG-CGGCGCGACCCGUug -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 25727 | 0.7 | 0.11011 |
Target: 5'- gGGGUCGUCGUCcucaccggcggcaGCaCGCugggcgcgcuGCUGGGCGGCg -3' miRNA: 3'- -UCCGGCGGCAG-------------CG-GCG----------CGACCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 21146 | 0.7 | 0.123093 |
Target: 5'- uGGCCGCCGUguCCGCGCccUGGuuCAACa -3' miRNA: 3'- uCCGGCGGCAgcGGCGCG--ACCc-GUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 3749 | 0.68 | 0.156703 |
Target: 5'- uGGGCaCGUCGgUGCCGcCGCUGGacGUAGCc -3' miRNA: 3'- -UCCG-GCGGCaGCGGC-GCGACC--CGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 6242 | 0.68 | 0.152593 |
Target: 5'- aGGGCCugcacGCCGguaacggUGCgguugaucugCGCGCUGGGCAGg -3' miRNA: 3'- -UCCGG-----CGGCa------GCG----------GCGCGACCCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 16291 | 0.68 | 0.148581 |
Target: 5'- aAGGCUacccgGUCGUCGUCGCGCacGGGaAGCg -3' miRNA: 3'- -UCCGG-----CGGCAGCGGCGCGa-CCCgUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 677 | 0.69 | 0.140845 |
Target: 5'- cAGGCCGCCuacggcggCGCCG-GCcGGGCcGCc -3' miRNA: 3'- -UCCGGCGGca------GCGGCgCGaCCCGuUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 4354 | 0.69 | 0.140845 |
Target: 5'- uGGCCGUugCGUUGCCgguGCGCgugaaGGCGACg -3' miRNA: 3'- uCCGGCG--GCAGCGG---CGCGac---CCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 20278 | 0.69 | 0.139716 |
Target: 5'- uGGCCGUCGUUGcCCGCaccaguagcggguuGCUcGGCGGCc -3' miRNA: 3'- uCCGGCGGCAGC-GGCG--------------CGAcCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 39849 | 0.69 | 0.137116 |
Target: 5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3' miRNA: 3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 3548 | 0.69 | 0.137116 |
Target: 5'- aGGcGCCGCCGaauagCGCagcagCGgGCUGGGCGuACa -3' miRNA: 3'- -UC-CGGCGGCa----GCG-----GCgCGACCCGU-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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