miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 25829 0.66 0.219305
Target:  5'- cGGGCCGCCGUUGgCGCcggucaguuccauGCUGGu---- -3'
miRNA:   3'- -UCCGGCGGCAGCgGCG-------------CGACCcguug -5'
26453 3' -64.4 NC_005357.1 + 11592 0.77 0.032215
Target:  5'- aGGGCCGCCGgcugGCCGC-C-GGGCAGCa -3'
miRNA:   3'- -UCCGGCGGCag--CGGCGcGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 22797 0.66 0.23664
Target:  5'- cGGGCCggucagcaugguGCCGgacuggcccgacuUCGCCGCGCUGc-CGACa -3'
miRNA:   3'- -UCCGG------------CGGC-------------AGCGGCGCGACccGUUG- -5'
26453 3' -64.4 NC_005357.1 + 40402 0.66 0.231322
Target:  5'- gAGGCgGCCGguaUGCCgGUGCU-GGUGGCg -3'
miRNA:   3'- -UCCGgCGGCa--GCGG-CGCGAcCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 16937 0.66 0.230738
Target:  5'- aGGGCacggCGCCGUCcagcagcguGCCGCGUUGGuauggaaGCGAa -3'
miRNA:   3'- -UCCG----GCGGCAG---------CGGCGCGACC-------CGUUg -5'
26453 3' -64.4 NC_005357.1 + 8748 0.66 0.230738
Target:  5'- aGGGCgCGCgCGUauucacgUGCCGCuucGGGCAGCa -3'
miRNA:   3'- -UCCG-GCG-GCA-------GCGGCGcgaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 19980 0.66 0.227833
Target:  5'- cAGGCCGCCGauguccgcguagaacUCGCCaacuugcucggcaugGCGCgccugcaucacaGGCAGCa -3'
miRNA:   3'- -UCCGGCGGC---------------AGCGG---------------CGCGac----------CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 8977 0.66 0.225532
Target:  5'- cGGUaaCGCCucgauuuccUCGCCGCGCggGGGCGc- -3'
miRNA:   3'- uCCG--GCGGc--------AGCGGCGCGa-CCCGUug -5'
26453 3' -64.4 NC_005357.1 + 15846 0.66 0.219865
Target:  5'- -cGCCGuCCGU-GUCGUGCUGGuGCcACg -3'
miRNA:   3'- ucCGGC-GGCAgCGGCGCGACC-CGuUG- -5'
26453 3' -64.4 NC_005357.1 + 38387 0.66 0.219865
Target:  5'- uGGCCuGCCGcUCGCCGCGgccGGCu-- -3'
miRNA:   3'- uCCGG-CGGC-AGCGGCGCgacCCGuug -5'
26453 3' -64.4 NC_005357.1 + 13168 0.75 0.045284
Target:  5'- cGGCCagUGUCgGCCGCGCUGGGCGc- -3'
miRNA:   3'- uCCGGcgGCAG-CGGCGCGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 18055 0.66 0.21432
Target:  5'- gGGGCCuuaCCGgCGCggggugCGUGCUGGGCcGCc -3'
miRNA:   3'- -UCCGGc--GGCaGCG------GCGCGACCCGuUG- -5'
26453 3' -64.4 NC_005357.1 + 16793 0.66 0.21432
Target:  5'- uGGUCGCCaGUUGCCaguuggucGCGCccaGGCGGCg -3'
miRNA:   3'- uCCGGCGG-CAGCGG--------CGCGac-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 38736 0.66 0.208895
Target:  5'- gGGGCaGCgCGUCGCCGUGgUGGauucGCAc- -3'
miRNA:   3'- -UCCGgCG-GCAGCGGCGCgACC----CGUug -5'
26453 3' -64.4 NC_005357.1 + 29540 0.66 0.208895
Target:  5'- uGGCCGCagaGgacacccaCGCCGUGCUcgGGGUAucGCg -3'
miRNA:   3'- uCCGGCGg--Ca-------GCGGCGCGA--CCCGU--UG- -5'
26453 3' -64.4 NC_005357.1 + 22070 0.67 0.20359
Target:  5'- cGGGUCGCgGUCGgCGCGCggcucgauGGCGu- -3'
miRNA:   3'- -UCCGGCGgCAGCgGCGCGac------CCGUug -5'
26453 3' -64.4 NC_005357.1 + 10332 0.67 0.20359
Target:  5'- cAGGCCGUa---GCCGuCGCUGcGGCGu- -3'
miRNA:   3'- -UCCGGCGgcagCGGC-GCGAC-CCGUug -5'
26453 3' -64.4 NC_005357.1 + 8212 0.67 0.18837
Target:  5'- cGGCC-UCGUaGUCGCGCUGGuCGGCg -3'
miRNA:   3'- uCCGGcGGCAgCGGCGCGACCcGUUG- -5'
26453 3' -64.4 NC_005357.1 + 11834 0.67 0.18837
Target:  5'- cAGaCCgGCCG-CGCCGCGguuggcCUGGGCGAa -3'
miRNA:   3'- -UCcGG-CGGCaGCGGCGC------GACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 30272 0.67 0.18837
Target:  5'- uGGUCGCgcgaGUCGCCGgaaaaCGUcGGGUAGCg -3'
miRNA:   3'- uCCGGCGg---CAGCGGC-----GCGaCCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.