miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 25020 0.68 0.164354
Target:  5'- cGGGuuGCCGUCcgagucaaaccacguGUCGCGCgauccgccguuaccaUcGGGCAGCa -3'
miRNA:   3'- -UCCggCGGCAG---------------CGGCGCG---------------A-CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 28822 0.68 0.156703
Target:  5'- -aGCgCGCCGUCGUCGgGUUGcGGCcgGACu -3'
miRNA:   3'- ucCG-GCGGCAGCGGCgCGAC-CCG--UUG- -5'
26453 3' -64.4 NC_005357.1 + 1284 0.7 0.104538
Target:  5'- gAGGugaugcCCGCCcacacCGCCGCGCccaGGGCGACg -3'
miRNA:   3'- -UCC------GGCGGca---GCGGCGCGa--CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 34229 0.71 0.093665
Target:  5'- uGGCCGCCauGUCGCUGaCGaacGGGCAGg -3'
miRNA:   3'- uCCGGCGG--CAGCGGC-GCga-CCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 11157 0.71 0.090868
Target:  5'- uGGGCCGCCugcgcacGUUGCgUGCGCUGGuCGGCc -3'
miRNA:   3'- -UCCGGCGG-------CAGCG-GCGCGACCcGUUG- -5'
26453 3' -64.4 NC_005357.1 + 23236 0.71 0.088638
Target:  5'- cGGCCaCCGaccgCGCCuCGCUGGGgAACa -3'
miRNA:   3'- uCCGGcGGCa---GCGGcGCGACCCgUUG- -5'
26453 3' -64.4 NC_005357.1 + 14852 0.71 0.088638
Target:  5'- uGGCgGCCaG-CGCCGCacGCUGGGCGc- -3'
miRNA:   3'- uCCGgCGG-CaGCGGCG--CGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 36671 0.72 0.079344
Target:  5'- aAGGCCcuggcgcacucGCUGccCGgCGCGCUGGGCGAUc -3'
miRNA:   3'- -UCCGG-----------CGGCa-GCgGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 28557 0.73 0.069226
Target:  5'- cGGCCGCCGgccaUCGCgGCGCgcacgucggccaccGGCAGCg -3'
miRNA:   3'- uCCGGCGGC----AGCGgCGCGac------------CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 13168 0.75 0.045284
Target:  5'- cGGCCagUGUCgGCCGCGCUGGGCGc- -3'
miRNA:   3'- uCCGGcgGCAG-CGGCGCGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 25727 0.7 0.11011
Target:  5'- gGGGUCGUCGUCcucaccggcggcaGCaCGCugggcgcgcuGCUGGGCGGCg -3'
miRNA:   3'- -UCCGGCGGCAG-------------CG-GCG----------CGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 21146 0.7 0.123093
Target:  5'- uGGCCGCCGUguCCGCGCccUGGuuCAACa -3'
miRNA:   3'- uCCGGCGGCAgcGGCGCG--ACCc-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 3749 0.68 0.156703
Target:  5'- uGGGCaCGUCGgUGCCGcCGCUGGacGUAGCc -3'
miRNA:   3'- -UCCG-GCGGCaGCGGC-GCGACC--CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 6242 0.68 0.152593
Target:  5'- aGGGCCugcacGCCGguaacggUGCgguugaucugCGCGCUGGGCAGg -3'
miRNA:   3'- -UCCGG-----CGGCa------GCG----------GCGCGACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 16291 0.68 0.148581
Target:  5'- aAGGCUacccgGUCGUCGUCGCGCacGGGaAGCg -3'
miRNA:   3'- -UCCGG-----CGGCAGCGGCGCGa-CCCgUUG- -5'
26453 3' -64.4 NC_005357.1 + 677 0.69 0.140845
Target:  5'- cAGGCCGCCuacggcggCGCCG-GCcGGGCcGCc -3'
miRNA:   3'- -UCCGGCGGca------GCGGCgCGaCCCGuUG- -5'
26453 3' -64.4 NC_005357.1 + 4354 0.69 0.140845
Target:  5'- uGGCCGUugCGUUGCCgguGCGCgugaaGGCGACg -3'
miRNA:   3'- uCCGGCG--GCAGCGG---CGCGac---CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 20278 0.69 0.139716
Target:  5'- uGGCCGUCGUUGcCCGCaccaguagcggguuGCUcGGCGGCc -3'
miRNA:   3'- uCCGGCGGCAGC-GGCG--------------CGAcCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 39849 0.69 0.137116
Target:  5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3'
miRNA:   3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5'
26453 3' -64.4 NC_005357.1 + 3548 0.69 0.137116
Target:  5'- aGGcGCCGCCGaauagCGCagcagCGgGCUGGGCGuACa -3'
miRNA:   3'- -UC-CGGCGGCa----GCG-----GCgCGACCCGU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.