miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 6242 0.68 0.152593
Target:  5'- aGGGCCugcacGCCGguaacggUGCgguugaucugCGCGCUGGGCAGg -3'
miRNA:   3'- -UCCGG-----CGGCa------GCG----------GCGCGACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 3749 0.68 0.156703
Target:  5'- uGGGCaCGUCGgUGCCGcCGCUGGacGUAGCc -3'
miRNA:   3'- -UCCG-GCGGCaGCGGC-GCGACC--CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 28822 0.68 0.156703
Target:  5'- -aGCgCGCCGUCGUCGgGUUGcGGCcgGACu -3'
miRNA:   3'- ucCG-GCGGCAGCGGCgCGAC-CCG--UUG- -5'
26453 3' -64.4 NC_005357.1 + 25020 0.68 0.164354
Target:  5'- cGGGuuGCCGUCcgagucaaaccacguGUCGCGCgauccgccguuaccaUcGGGCAGCa -3'
miRNA:   3'- -UCCggCGGCAG---------------CGGCGCG---------------A-CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 9320 0.68 0.165225
Target:  5'- uGGCggCGCaCGUCGgCGCgGC-GGGCGGCg -3'
miRNA:   3'- uCCG--GCG-GCAGCgGCG-CGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 39849 0.69 0.137116
Target:  5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3'
miRNA:   3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5'
26453 3' -64.4 NC_005357.1 + 20272 0.67 0.193329
Target:  5'- cGGCCGCgGgCGCUGCcaagaccgaGGGCGACg -3'
miRNA:   3'- uCCGGCGgCaGCGGCGcga------CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 24505 0.67 0.18837
Target:  5'- -uGUCGCCGagGCCGCGC-GcGGCAccgACa -3'
miRNA:   3'- ucCGGCGGCagCGGCGCGaC-CCGU---UG- -5'
26453 3' -64.4 NC_005357.1 + 23159 0.67 0.178787
Target:  5'- gGGcGCCGCCGUUGgCGUcg-GGGCGAg -3'
miRNA:   3'- -UC-CGGCGGCAGCgGCGcgaCCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 10819 0.68 0.17416
Target:  5'- cGGGCCGaaGUCGagCGCGCccuUGGcgaGCAGCa -3'
miRNA:   3'- -UCCGGCggCAGCg-GCGCG---ACC---CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 13454 0.68 0.17416
Target:  5'- -uGCCGCCuacaacCG-CGCGCUGGGCAu- -3'
miRNA:   3'- ucCGGCGGca----GCgGCGCGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 6649 0.68 0.17416
Target:  5'- uGG-UGCCG--GCCGUGCUGGGCuACu -3'
miRNA:   3'- uCCgGCGGCagCGGCGCGACCCGuUG- -5'
26453 3' -64.4 NC_005357.1 + 27899 0.68 0.16964
Target:  5'- cGGcGCgGCCGgCGCCacCGC-GGGCAGCg -3'
miRNA:   3'- -UC-CGgCGGCaGCGGc-GCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 25668 0.68 0.165225
Target:  5'- -cGCCGCCGUgGuuGCcacugcCUGGGCcGCa -3'
miRNA:   3'- ucCGGCGGCAgCggCGc-----GACCCGuUG- -5'
26453 3' -64.4 NC_005357.1 + 12741 0.69 0.144666
Target:  5'- cGGGCC-UCGacacgCGCCuGCGCaugaUGGGCGACg -3'
miRNA:   3'- -UCCGGcGGCa----GCGG-CGCG----ACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 28252 0.69 0.144666
Target:  5'- aAGG-CGCCGcaccUGCUGgGCgUGGGCAACg -3'
miRNA:   3'- -UCCgGCGGCa---GCGGCgCG-ACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 32432 0.69 0.138597
Target:  5'- uGGGCgGCCGggGCCucggcggcgaccgcaGCGacCUGGGCGGCg -3'
miRNA:   3'- -UCCGgCGGCagCGG---------------CGC--GACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 37341 0.69 0.133478
Target:  5'- cAGGCgGCCGUCGCUGCucacGCccuuGGCGAg -3'
miRNA:   3'- -UCCGgCGGCAGCGGCG----CGac--CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 35240 0.67 0.193329
Target:  5'- cGGGCCGauGUCGCCG-GCcuUGuGCAGCu -3'
miRNA:   3'- -UCCGGCggCAGCGGCgCG--ACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 29530 0.67 0.198401
Target:  5'- uGGCCGCgcgcuCGUCGCCugGUGCcaggagcaccUGGGCGcgACg -3'
miRNA:   3'- uCCGGCG-----GCAGCGG--CGCG----------ACCCGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.