Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26453 | 3' | -64.4 | NC_005357.1 | + | 6242 | 0.68 | 0.152593 |
Target: 5'- aGGGCCugcacGCCGguaacggUGCgguugaucugCGCGCUGGGCAGg -3' miRNA: 3'- -UCCGG-----CGGCa------GCG----------GCGCGACCCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 16291 | 0.68 | 0.148581 |
Target: 5'- aAGGCUacccgGUCGUCGUCGCGCacGGGaAGCg -3' miRNA: 3'- -UCCGG-----CGGCAGCGGCGCGa-CCCgUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 677 | 0.69 | 0.140845 |
Target: 5'- cAGGCCGCCuacggcggCGCCG-GCcGGGCcGCc -3' miRNA: 3'- -UCCGGCGGca------GCGGCgCGaCCCGuUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 4354 | 0.69 | 0.140845 |
Target: 5'- uGGCCGUugCGUUGCCgguGCGCgugaaGGCGACg -3' miRNA: 3'- uCCGGCG--GCAGCGG---CGCGac---CCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 20278 | 0.69 | 0.139716 |
Target: 5'- uGGCCGUCGUUGcCCGCaccaguagcggguuGCUcGGCGGCc -3' miRNA: 3'- uCCGGCGGCAGC-GGCG--------------CGAcCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 39849 | 0.69 | 0.137116 |
Target: 5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3' miRNA: 3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 1371 | 0.72 | 0.076957 |
Target: 5'- uGGUgGCCGUCGCCcuggGCGCggcggugUGGGCGGg -3' miRNA: 3'- uCCGgCGGCAGCGG----CGCG-------ACCCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 13084 | 0.72 | 0.086222 |
Target: 5'- gAGGCCGUCGcCaCUGCGCUGcGCGGCc -3' miRNA: 3'- -UCCGGCGGCaGcGGCGCGACcCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 37934 | 0.71 | 0.096278 |
Target: 5'- gAGGCCGaaGUCGCCgagGCGCUGcucggugcgccaGGCGAg -3' miRNA: 3'- -UCCGGCggCAGCGG---CGCGAC------------CCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 20362 | 0.71 | 0.096278 |
Target: 5'- cGGCCGCCGagcaaccCGCUacugGUGC-GGGCAACg -3' miRNA: 3'- uCCGGCGGCa------GCGG----CGCGaCCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 27491 | 0.71 | 0.098961 |
Target: 5'- cGGCCGCCGggCGCgGUGCgccaGGcgcGCGACg -3' miRNA: 3'- uCCGGCGGCa-GCGgCGCGa---CC---CGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 14974 | 0.71 | 0.102835 |
Target: 5'- gAGGCCgGCCagcagcagaUCGCCGCGCagacccugaaagccGGGCAACu -3' miRNA: 3'- -UCCGG-CGGc--------AGCGGCGCGa-------------CCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 4447 | 0.73 | 0.070987 |
Target: 5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 14348 | 0.73 | 0.065281 |
Target: 5'- uGGGCCGCa-UCGCCGacaGCaUGGuGCAGCa -3' miRNA: 3'- -UCCGGCGgcAGCGGCg--CG-ACC-CGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 6911 | 0.74 | 0.052148 |
Target: 5'- gGGGCCuacgaaaagGCCGUCGCCGa---GGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGGCgcgaCCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 41704 | 0.75 | 0.047917 |
Target: 5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3' miRNA: 3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 12358 | 0.76 | 0.037136 |
Target: 5'- -cGCCGCCGUaGCCGgcaCGCUGGGcCAGCa -3' miRNA: 3'- ucCGGCGGCAgCGGC---GCGACCC-GUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 24621 | 0.78 | 0.028744 |
Target: 5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3' miRNA: 3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 25150 | 0.8 | 0.019821 |
Target: 5'- cGG-CGCCGggcgCGCUGCGCUGGGUGGCg -3' miRNA: 3'- uCCgGCGGCa---GCGGCGCGACCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 41603 | 0.65 | 0.241453 |
Target: 5'- aGGGCCGCCGcguuguuccagaagUUGaCCGCGCUuucGUAGCc -3' miRNA: 3'- -UCCGGCGGC--------------AGC-GGCGCGAcc-CGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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